miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48915_osa-miR319b:pmrd
Length = 197
Score = 343 bits (173), Expect = 3e-95
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 73
Query: 61 cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 133
Query: 121 gggaggtaacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gggaggtaacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 186
>55050_zma-miR319b:pmrd
Length = 213
Score = 174 bits (88), Expect = 1e-44
Identities = 155/174 (89%), Gaps = 5/174 (2%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 24 gagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 83
Query: 61 cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
||||||||||||||| || || || | | ||||| |||||||||||||||||||
Sbjct: 84 cccacatgccaagca--aacggccatggaaacc--agctttgcagatgagtgaatgaagc 139
Query: 121 gggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
||||||| || | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 140 gggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 193
>55053_zma-miR319e:pmrd
Length = 173
Score = 167 bits (84), Expect = 3e-42
Identities = 154/174 (88%), Gaps = 5/174 (2%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 3 gagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactcattca 62
Query: 61 cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
|||||||||||||| ||||| | | || ||||| |||||||||||||||||||
Sbjct: 63 cccacatgccaagc---aaacggccatggaaacg-agcttcgcagatgagtgaatgaagc 118
Query: 121 gggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
||||||| || | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 119 gggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 172
>55052_zma-miR319d:pmrd
Length = 212
Score = 167 bits (84), Expect = 3e-42
Identities = 154/174 (88%), Gaps = 5/174 (2%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 23 gagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactcattca 82
Query: 61 cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
|||||||||||||| ||||| | | || ||||| |||||||||||||||||||
Sbjct: 83 cccacatgccaagc---aaacggccatggaaacg-agcttcgcagatgagtgaatgaagc 138
Query: 121 gggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
||||||| || | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 139 gggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 192
>54468_sbi-miR319:pmrd
Length = 249
Score = 165 bits (83), Expect = 1e-41
Identities = 155/175 (88%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 36 gagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 95
Query: 61 cccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatgagtgaatgaag 119
|||||||||||||||| | | || | ||| ||||| ||||||||||||||||||
Sbjct: 96 cccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatgagtgaatgaag 154
Query: 120 cgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
|||||||| || | | ||||||||| || ||||||||||||||||||||||||||
Sbjct: 155 cgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggtgctcc 209
>54844_vvi-miR319c:pmrd
Length = 182
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
|||||||||||||||||| || |||| | ||||||||||||||||||||||
Sbjct: 20 cttcagtccactcatgggtggcagtaggattgaattagctgccgactcattca 72
>51707_ptc-miR319a:pmrd
Length = 188
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
|||||||||||||||||| ||| |||| | |||||||||||||||||||||
Sbjct: 20 cttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 72
>51712_ptc-miR319f:pmrd
Length = 202
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 34 gggtcgaattagctgccgactcattca 60
|||| ||||||||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattca 75
>51351_ppl-miR319:pmrd
Length = 204
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 gaattagctgccgactcattca 60
||||||||||||||||||||||
Sbjct: 53 gaattagctgccgactcattca 74
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcacccacatgc 69
||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcatccaaatgc 92
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctaggg-tcgaattagctgccgactcattc 59
|||| ||||||||||||||||||| ||| |||| | | |||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
Query: 60 a 60
|
Sbjct: 61 a 61
>51710_ptc-miR319d:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgggcggtgctaggg-tcgaattagctgccgactcattc 59
|||| ||||||||||||||||||| ||| |||| | | |||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 72
Query: 60 a 60
|
Sbjct: 73 a 73
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattca 60
|||||||||||||||||||||
Sbjct: 62 aattagctgccgactcattca 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 101 agcagatgagtgaatgaagcgggag 125
||||||||||||||||| |||||||
Sbjct: 117 agcagatgagtgaatgatgcgggag 141
>54846_vvi-miR319f:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gagcgtccttcagtccactcatgg 24
|||| |||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatgg 36
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattca 60
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 attagctgccgactcattca 60
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
>48914_osa-miR319a:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 142 gcgccgtctttgcttggactgaagggtgctcc 173
||||||| | || |||||||||||||||||||
Sbjct: 149 gcgccgtttgtggttggactgaagggtgctcc 180
>48476_dso-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 40 aattagctgccgactcattcacccacat 67
|||||||| |||||||||||| ||||||
Sbjct: 52 aattagcttccgactcattcatccacat 79
