miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46847_ace-miR170a:pmrd
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcacgggcgcctataatatttctagattcgatgaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatctcacgggcgcctataatatttctagattcgatgaattca 60
Query: 61 gcagccttgaacaactgaccagctaaatc 89
|||||||||||||||||||||||||||||
Sbjct: 61 gcagccttgaacaactgaccagctaaatc 89
>46849_ace-miR170c:pmrd
Length = 55
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcacg 26
||||||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatctcacg 26
>48407_bra-miR171e:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctca 107
>48369_bna-miR171g:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatctca 101
>48368_bna-miR171f:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctca 107
>48311_bdi-miR171a:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcacgggcgcc 32
||||||||||||||||||||||| || |||||
Sbjct: 50 tgattgagccgcgccaatatctctcgcgcgcc 81
>46977_ath-miR171a:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||||||||||||||||
Sbjct: 88 tgattgagccgcgccaatatctca 111
>48895_osa-miR171a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctc 23
|||||||||||||||||||||||
Sbjct: 67 tgattgagccgcgccaatatctc 89
>48313_bdi-miR171d:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctc 23
|||||||||||||||||||||||
Sbjct: 81 tgattgagccgcgccaatatctc 103
>55028_zma-miR171a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 79 tgattgagccgcgccaatatc 99
>55027_zma-miR170p:pmrd
Length = 62
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 42 tgattgagccgcgccaatatc 62
>54832_vvi-miR171e:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 70 tgattgagccgcgccaatatc 90
>54667_stu-miR171:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54666_stu-miR170:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54553_sly-miR171c:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>54461_sbi-miR171j:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 83 tgattgagccgcgccaatatc 103
>54458_sbi-miR171g:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 57 tgattgagccgcgccaatatc 77
>54451_sbi-miR170:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 35 tgattgagccgcgccaatatc 55
>51342_ppd-miR170:pmrd
Length = 297
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 277 tgattgagccgcgccaatatc 297
>48723_mtr-miR171g:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcac 25
||||||||||| |||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctcac 104
>48722_mtr-miR171d:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcac 25
||||||||||| |||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctcac 104
>48636_gra-miR171:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>48569_gma-miR171m:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>48484_gcl-miR171:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 185 tgattgagccgcgccaatatc 205
>46982_ath-miR171o:pmrd
Length = 339
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 319 tgattgagccgcgccaatatc 339
>46981_ath-miR171n:pmrd
Length = 461
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46980_ath-miR171m:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92
>46976_ath-miR170n:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>46975_ath-miR170m:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92
>46853_ace-miR171c:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 196 tgattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215
>46850_ace-miR170d:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215
>46848_ace-miR170b:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 56 tgattgagccgcgccaatatc 76
>55031_zma-miR171d:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||| ||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctca 105
>54910_zel-miR171:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>54833_vvi-miR171f:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatc 90
>54640_sof-miR171b:pmrd
Length = 201
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctcacgggcgcc 32
||||||| ||||||||||||||| || |||||
Sbjct: 1 tgattgacccgcgccaatatctcgcgcgcgcc 32
>54554_sly-miR171d:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>54551_sly-miR171a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||| ||||||||||||
Sbjct: 87 tgattgagccgtgccaatatctca 110
>54455_sbi-miR171d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||| ||||||||||||
Sbjct: 115 tgattgagccgtgccaatatctca 138
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>51692_ptc-miR171i:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||| ||||||||||||
Sbjct: 100 tgattgagccgtgccaatatctca 123
>51687_ptc-miR171d:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatc 91
>51686_ptc-miR171c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatc 95
>51383_ppt-miR171b:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>51382_ppt-miR171a:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatc 83
>48898_osa-miR171d:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatctca 24
||||||||||| ||||||||||||
Sbjct: 105 tgattgagccgtgccaatatctca 128
>48497_ghr-miR171:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatc 85
