miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47363_ath-miRf10263-akr:pmrd
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gtagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtat 60
Query: 61 ggtgtcgatcgacaccatctctgc 84
||||||||||||||||||||||||
Sbjct: 61 ggtgtcgatcgacaccatctctgc 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 59 atggtgtcgatcgacaccat 78
||||||||||||||||||||
Sbjct: 78 atggtgtcgatcgacaccat 59
>47933_ath-miRf10833-akr:pmrd
Length = 96
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tagaggggtatcggtcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 78
Query: 62 gtgtcgatcgacac 75
||||||||||||||
Sbjct: 79 gtgtcgatcgacac 92
>47324_ath-miRf10224-akr:pmrd
Length = 107
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 tagaggggtatcggtcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 85
Query: 62 gtgtcgatcgacac 75
||||||||||||||
Sbjct: 86 gtgtcgatcgacac 99
>47388_ath-miRf10288-akr:pmrd
Length = 96
Score = 131 bits (66), Expect = 9e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 19 tagaggggtatcgatcgacaccgtcatattgagtcgtctctgagaaaagagtcccgtatg 78
Query: 62 gtgtcgatcgacac 75
||||||||||||||
Sbjct: 79 gtgtcgatcgacac 92
>48212_ath-miRf11112-akr:pmrd
Length = 96
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
||||||||||||||| |||||||||||||| ||||||||||||||| || |||| ||||
Sbjct: 19 tagaggggtatcgattgacaccgtcgtatttagtcgtctctgagaagagcatcccctatg 78
Query: 62 gtgtcgatcgacac 75
||||||||||||||
Sbjct: 79 gtgtcgatcgacac 92
>47920_ath-miRf10820-akr:pmrd
Length = 112
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
||||||||||||||| |||||||||||||| ||||||||||||||| || |||| ||||
Sbjct: 86 tagaggggtatcgattgacaccgtcgtatttagtcgtctctgagaagagcatcccctatg 27
Query: 62 gtgtcgatcgacac 75
||||||||||||||
Sbjct: 26 gtgtcgatcgacac 13
>47629_ath-miRf10529-akr:pmrd
Length = 108
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
||||||||||||||| |||||||||||||| ||||||||||||||| || |||| ||||
Sbjct: 26 tagaggggtatcgattgacaccgtcgtatttagtcgtctctgagaagagcatcccctatg 85
Query: 62 gtgtcgatcgacac 75
||||||||||||||
Sbjct: 86 gtgtcgatcgacac 99
>48288_ath-miRf11188-akr:pmrd
Length = 96
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
|||||||||||||||||||| |||||||||||||||||| || || || ||||| || |
Sbjct: 19 tagaggggtatcgatcgacatcgtcgtattgagtcgtcttagaaaagagtgtcccatagg 78
Query: 62 gtgtcgatcgacac 75
||||||||||||||
Sbjct: 79 gtgtcgatcgacac 92
>48116_ath-miRf11016-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
|||||||||||||||||||||| ||||| || ||||||| ||||| || |||||||| |
Sbjct: 1 tagaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagg 60
Query: 62 gtgtc-gatcgaca 74
||||| ||||||||
Sbjct: 61 gtgtcagatcgaca 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ggtgtcgatcgacaccatctctg 83
|||||||||||||||||||||||
Sbjct: 81 ggtgtcgatcgacaccatctctg 103
>47506_ath-miRf10406-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatg 61
|||||||||||||||||||||| ||||| || ||||||| ||||| || |||||||| |
Sbjct: 1 tagaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagg 60
Query: 62 gtgtc-gatcgaca 74
||||| ||||||||
Sbjct: 61 gtgtcagatcgaca 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ggtgtcgatcgacaccatctctg 83
|||||||||||||||||||||||
Sbjct: 81 ggtgtcgatcgacaccatctctg 103
>47190_ath-miRf10090-akr:pmrd
Length = 101
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 3 agaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatgg 62
||||||||||||||||||||| ||||| || ||||||| ||||| || |||||||| ||
Sbjct: 101 agaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtaggg 42
Query: 63 tgtc-gatcgaca 74
|||| ||||||||
Sbjct: 41 tgtcagatcgaca 29
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 61 ggtgtcgatcgacaccatctct 82
||||||||||||||||||||||
Sbjct: 22 ggtgtcgatcgacaccatctct 1
>47836_ath-miRf10736-akr:pmrd
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 4 gaggggtatcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatggt 63
|||||||||||||||||||| ||||| || ||||||| ||||| || |||||||| |||
Sbjct: 99 gaggggtatcgatcgacaccttcgtactggctcgtctcagagaagagcgtcccgtagggt 40
Query: 64 gtc-gatcgaca 74
||| ||||||||
Sbjct: 39 gtcagatcgaca 28
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 61 ggtgtcgatcgacaccatctc 81
|||||||||||||||||||||
Sbjct: 21 ggtgtcgatcgacaccatctc 1
>47679_ath-miRf10579-akr:pmrd
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 12 tcgatcgacaccgtcgtattgagtcgtctctgagaaaagggtcccgtatggtgtcgatcg 71
||||||||||||||||||| || |||||| ||||| || || || || |||||||||||
Sbjct: 71 tcgatcgacaccgtcgtatggaatcgtcttagagaagagtgttccatagggtgtcgatcg 12
Query: 72 acac 75
||||
Sbjct: 11 acac 8
>47934_ath-miRf10834-akr:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 tggtgtcgatcgacaccatc 79
||||||||||||||||||||
Sbjct: 86 tggtgtcgatcgacaccatc 67
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59 atggtgtcgatcgacacca 77
|||||||||||||||||||
Sbjct: 68 atggtgtcgatcgacacca 86
>47523_ath-miRf10423-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 tggtgtcgatcgacaccatc 79
||||||||||||||||||||
Sbjct: 122 tggtgtcgatcgacaccatc 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59 atggtgtcgatcgacacca 77
|||||||||||||||||||
Sbjct: 104 atggtgtcgatcgacacca 122
>47147_ath-miRf10047-akr:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 tggtgtcgatcgacaccatc 79
||||||||||||||||||||
Sbjct: 70 tggtgtcgatcgacaccatc 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 59 atggtgtcgatcgacacca 77
|||||||||||||||||||
Sbjct: 88 atggtgtcgatcgacacca 70
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61 ggtgtcgatcgacaccatc 79
|||||||||||||||||||
Sbjct: 13 ggtgtcgatcgacaccatc 31
>48073_ath-miRf10973-akr:pmrd
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 61 ggtgtcgatcgacaccatc 79
|||||||||||||||||||
Sbjct: 71 ggtgtcgatcgacaccatc 53
>47554_ath-miRf10454-akr:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61 ggtgtcgatcgacaccatc 79
|||||||||||||||||||
Sbjct: 28 ggtgtcgatcgacaccatc 46
>47511_ath-miRf10411-akr:pmrd
Length = 144
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61 ggtgtcgatcgacaccatc 79
|||||||||||||||||||
Sbjct: 18 ggtgtcgatcgacaccatc 36
>47431_ath-miRf10331-akr:pmrd
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 2 tagaggggtatcgatcgacaccgtcgt 28
|||||| ||||||||||||||| ||||
Sbjct: 10 tagaggtgtatcgatcgacaccctcgt 36
>47224_ath-miRf10124-akr:pmrd
Length = 111
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 61 ggtgtcgatcgacaccatc 79
|||||||||||||||||||
Sbjct: 85 ggtgtcgatcgacaccatc 67
>47198_ath-miRf10098-akr:pmrd
Length = 140
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 61 ggtgtcgatcgacaccatc 79
|||||||||||||||||||
Sbjct: 125 ggtgtcgatcgacaccatc 107
