miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49997_osa-miRf10782-akr:pmrd
Length = 191
Score = 63.9 bits (32), Expect = 1e-11
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 31 gattttgtatttcgatgacaaattgagggacctttggtgtactt 74
||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 191 gattttgtaattcgatgacaagttgagggacctttgttgtactt 148
Score = 48.1 bits (24), Expect = 8e-07
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 31 gattttgtatttcgatgacaaattgagggacctttggtgtactt 74
||||||||| ||| ||||||| |||||||||||| |||| ||||
Sbjct: 1 gattttgtaattcaatgacaagttgagggaccttcggtgcactt 44
>50386_osa-miRf11171-akr:pmrd
Length = 113
Score = 52.0 bits (26), Expect = 5e-08
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 33 ttttgtatttcgatgacaaattgagggacctttggtgtactt 74
||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 113 ttttgtaactcgatgacaagttgagggacctttggtgcactt 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 42 tcgatgacaaattgagggacctttggtgtactt 74
|||||||||| |||||||||||| |||||||||
Sbjct: 10 tcgatgacaagttgagggaccttcggtgtactt 42
>49582_osa-miRf10367-akr:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 42 tcgatgacaaattgagggacctttggtgtactt 74
|||||||||| |||||||||||| |||||||||
Sbjct: 2 tcgatgacaagttgagggaccttcggtgtactt 34
>50690_osa-miRf11475-akr:pmrd
Length = 155
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 43 cgatgacaaattgagggacctttggtgtactt 74
||||||||| || |||||||||||||||||||
Sbjct: 147 cgatgacaagttcagggacctttggtgtactt 116
>50387_osa-miRf11172-akr:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 43 cgatgacaaattgagggacctttggtgtactt 74
||||||||| |||||||||||| |||||||||
Sbjct: 1 cgatgacaagttgagggaccttcggtgtactt 32
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 43 cgatgacaaattgagggacctttggtgtactt 74
||||||||| ||||||||||||||||| ||||
Sbjct: 93 cgatgacaagttgagggacctttggtgcactt 62
>50993_osa-miRf11778-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||||| |||||||||
Sbjct: 1 gatgacaagttgagggaccttaggtgtactt 31
>50992_osa-miRf11777-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||||| |||||||||
Sbjct: 113 gatgacaagttgagggaccttaggtgtactt 83
>50991_osa-miRf11776-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||||| |||||||||
Sbjct: 113 gatgacaagttgagggaccttaggtgtactt 83
>50990_osa-miRf11775-akr:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||||| |||||||||
Sbjct: 7 gatgacaagttgagggaccttaggtgtactt 37
>50114_osa-miRf10899-akr:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||||| |||||||||
Sbjct: 134 gatgacaagttgagggaccttgggtgtactt 104
>49434_osa-miRf10219-akr:pmrd
Length = 177
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||||| |||||||||
Sbjct: 1 gatgacaagttgagggaccttcggtgtactt 31
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 44 gatgacaaattgagggacctttggtgtac 72
|||||||| |||||||||||| |||||||
Sbjct: 177 gatgacaagttgagggaccttgggtgtac 149
>50395_osa-miRf11180-akr:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 43 cgatgacaaattgagggacctttggtgtac 72
||||||||| |||||||||||| |||||||
Sbjct: 5 cgatgacaagttgagggaccttcggtgtac 34
>50394_osa-miRf11179-akr:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 43 cgatgacaaattgagggacctttggtgtac 72
||||||||| |||||||||||| |||||||
Sbjct: 144 cgatgacaagttgagggaccttcggtgtac 115
>50393_osa-miRf11178-akr:pmrd
Length = 162
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 43 cgatgacaaattgagggacctttggtgtac 72
||||||||| |||||||||||| |||||||
Sbjct: 151 cgatgacaagttgagggaccttcggtgtac 122
>50392_osa-miRf11177-akr:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 43 cgatgacaaattgagggacctttggtgtac 72
||||||||| |||||||||||| |||||||
Sbjct: 153 cgatgacaagttgagggaccttcggtgtac 124
>49790_osa-miRf10575-akr:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 43 cgatgacaaattgagggacctttggtgtactt 74
||||||||| ||||||||||||| |||||||
Sbjct: 115 cgatgacaagatgagggacctttgatgtactt 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||| |||||||||||
Sbjct: 3 gatgacaagttgagggacc-ttggtgtactt 32
>49789_osa-miRf10574-akr:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 43 cgatgacaaattgagggacctttggtgtactt 74
||||||||| ||||||||||||| |||||||
Sbjct: 119 cgatgacaagatgagggacctttgatgtactt 88
Score = 38.2 bits (19), Expect = 8e-04
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||| |||||||||||
Sbjct: 7 gatgacaagttgagggacc-ttggtgtactt 36
>49788_osa-miRf10573-akr:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 43 cgatgacaaattgagggacctttggtgtactt 74
||||||||| ||||||||||||| |||||||
Sbjct: 11 cgatgacaagatgagggacctttgatgtactt 42
Score = 38.2 bits (19), Expect = 8e-04
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Minus
Query: 44 gatgacaaattgagggacctttggtgtactt 74
|||||||| |||||||||| |||||||||||
Sbjct: 123 gatgacaagttgagggacc-ttggtgtactt 94
>50115_osa-miRf10900-akr:pmrd
Length = 123
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 48 acaaattgagggacctttggtgtactt 74
|||| |||||||||||| |||||||||
Sbjct: 123 acaagttgagggaccttgggtgtactt 97
>49498_osa-miRf10283-akr:pmrd
Length = 87
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 48 acaaattgagggacctttggtgtactt 74
|||| |||||||||||| |||||||||
Sbjct: 5 acaagttgagggaccttcggtgtactt 31
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 48 acaaattgagggacctttggtgtactt 74
||||||||||||||||| |||| ||||
Sbjct: 83 acaaattgagggaccttcggtgcactt 57
>49331_osa-miRf10116-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 42 tcgatgacaaattgagggacctt 64
|||||||||| ||||||||||||
Sbjct: 105 tcgatgacaagttgagggacctt 83
