miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49844_osa-miRf10629-akr:pmrd
Length = 81
Score = 67.9 bits (34), Expect = 1e-12
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 22 cagtactgctcactgacatgtgggccccacagcccctcgggtccacatgtcagt 75
|||||| |||||||||||| |||||||||||| |||||| | ||||||||||||
Sbjct: 73 cagtacagctcactgacatatgggccccacagaccctcgagcccacatgtcagt 20
>49666_osa-miRf10451-akr:pmrd
Length = 110
Score = 67.9 bits (34), Expect = 1e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 33 actgacatgtgggccccacagcccctcgggtccacatgtcagtgag 78
||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 33 actgacatgtgggccccacagaccctcgagcccacatgtcagtgag 78
>50453_osa-miRf11238-akr:pmrd
Length = 119
Score = 63.9 bits (32), Expect = 2e-11
Identities = 63/73 (86%), Gaps = 4/73 (5%)
Strand = Plus / Plus
Query: 3 ggtcctctgcagtactgcaca----gtactgctcactgacatgtgggccccacagcccct 58
||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||
Sbjct: 9 ggtcctctgcagtactgcacatacagtactgctcactgatatgtgggccccatagaccct 68
Query: 59 cgggtccacatgt 71
|| ||||||||
Sbjct: 69 gtggcccacatgt 81
>50454_osa-miRf11239-akr:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 61/71 (85%), Gaps = 4/71 (5%)
Strand = Plus / Minus
Query: 5 tcctctgcagtactgcaca----gtactgctcactgacatgtgggccccacagcccctcg 60
||||||||||||||||||| |||||||||||||| |||||||||||| || ||||
Sbjct: 99 tcctctgcagtactgcacatacagtactgctcactgatatgtgggccccatagaccctgt 40
Query: 61 ggtccacatgt 71
|| ||||||||
Sbjct: 39 ggcccacatgt 29
>50722_osa-miRf11507-akr:pmrd
Length = 67
Score = 50.1 bits (25), Expect = 3e-07
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 28 tgctcactgacatgtgggccccacagcccctcgggtccacatgtcagtgagca 80
|||||||||||||||| ||||| |||| |||||| ||||||| ||||||||
Sbjct: 60 tgctcactgacatgtgaaccccatagcctctcgggctcacatgtaagtgagca 8
Score = 46.1 bits (23), Expect = 5e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 22 cagtactgctcactgacatgtgggccccacagcccctcgggtccacatgtcagtgagca 80
|||||||||||||| ||||||| |||| | || | | |||| ||||||||||||||||
Sbjct: 2 cagtactgctcacttacatgtgagcccgagaggctatggggttcacatgtcagtgagca 60
>50721_osa-miRf11506-akr:pmrd
Length = 67
Score = 50.1 bits (25), Expect = 3e-07
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 28 tgctcactgacatgtgggccccacagcccctcgggtccacatgtcagtgagca 80
|||||||||||||||| ||||| |||| |||||| ||||||| ||||||||
Sbjct: 60 tgctcactgacatgtgaaccccatagcctctcgggctcacatgtaagtgagca 8
Score = 46.1 bits (23), Expect = 5e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 22 cagtactgctcactgacatgtgggccccacagcccctcgggtccacatgtcagtgagca 80
|||||||||||||| ||||||| |||| | || | | |||| ||||||||||||||||
Sbjct: 2 cagtactgctcacttacatgtgagcccgagaggctatggggttcacatgtcagtgagca 60
