miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47267_ath-miRf10167-akr:pmrd
Length = 111
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ttggtgtcgatcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaatc 49
Query: 61 ccgaaggtgtcgatctacacctctgatgtgtcggtcgacaccaa 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 ccgaaggtgtcgatctacacctctgatgtgtcggtcgacaccaa 5
>47509_ath-miRf10409-akr:pmrd
Length = 112
Score = 97.6 bits (49), Expect = 2e-21
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaatc 60
|||||||||||||||||||||||||||||| ||||||||||||| |||| |||| | ||
Sbjct: 5 ttggtgtcgatcgacacctctgttgtgtcgctcgacaccaatcgcgtctacattatgctc 64
Query: 61 ccgaaggtgtcgatctacacc 81
|| |||||||||||| |||||
Sbjct: 65 ccaaaggtgtcgatcgacacc 85
>48073_ath-miRf10973-akr:pmrd
Length = 84
Score = 85.7 bits (43), Expect = 6e-18
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 11 tcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaatcccgaaggtgt 70
|||||||||||||||||||| ||||||||||||| ||| || | || |||||| |||||
Sbjct: 1 tcgacacctctgttgtgtcggtcgacaccaatcgcgtcgtcgtgctgctcccgatggtgt 60
Query: 71 cgatctacacctctgatgtgtcg 93
||||| ||||||||| |||||||
Sbjct: 61 cgatcgacacctctgttgtgtcg 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tggtgtcgatcgacacctctgttgtgtcg 30
|||||||||||||||||||||||||||||
Sbjct: 55 tggtgtcgatcgacacctctgttgtgtcg 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 acacctctgatgtgtcggtcgacaccaa 104
||||||||| ||||||||||||||||||
Sbjct: 4 acacctctgttgtgtcggtcgacaccaa 31
>47330_ath-miRf10230-akr:pmrd
Length = 112
Score = 81.8 bits (41), Expect = 9e-17
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacaccaatcgtgtcttcattctaatc 60
|||||||||||||||||||||||||||| ||||||||||||||| ||| | |||| ||
Sbjct: 5 ttggtgtcgatcgacacctctgttgtgttgttcgacaccaatcgcatctgcgttctggtc 64
Query: 61 ccgaaggtgtcgatctacacc 81
||||||||||||| |||||
Sbjct: 65 atgaaggtgtcgatcgacacc 85
>48109_ath-miRf11009-akr:pmrd
Length = 116
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacacc 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ttggtgtcgatcgacacctctgttgtgtcgttcgacacc 45
>47934_ath-miRf10834-akr:pmrd
Length = 91
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacacc 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttggtgtcgatcgacacctctgttgtgtcgttcgacacc 43
>47554_ath-miRf10454-akr:pmrd
Length = 112
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacacc 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ttggtgtcgatcgacacctctgttgtgtcgttcgacacc 70
>47224_ath-miRf10124-akr:pmrd
Length = 111
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 ttggtgtcgatcgacacctctgttgtgtcgttcgacacc 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttggtgtcgatcgacacctctgttgtgtcgttcgacacc 43
>47360_ath-miRf10260-akr:pmrd
Length = 91
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 1 ttggtgtcgatcgacacctctgttgtgtc 29
|||||||||||||||||||||||||||||
Sbjct: 87 ttggtgtcgatcgacacctctgttgtgtc 59
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 12 cgacacctctgttgtgtcgttcgacacc 39
||||||||||||| ||||||||||||||
Sbjct: 82 cgacacctctgttatgtcgttcgacacc 55
>47692_ath-miRf10592-akr:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 59 tcccgaaggtgtcgatctacacct 82
||||||||||||||||| ||||||
Sbjct: 10 tcccgaaggtgtcgatcgacacct 33
