miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48381_bna-miR2111a:pmrd
Length = 151
Score = 299 bits (151), Expect = 3e-82
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 1 gatgacaagtattggtgaggaccgggtaatctgcatcctgaggtttaaagcttgattata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgacaagtattggtgaggaccgggtaatctgcatcctgaggtttaaagcttgattata 60
Query: 61 cgcataacatgccgacgcatataactatgtgttttagaatagcttttagtcctcgggatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgcataacatgccgacgcatataactatgtgttttagaatagcttttagtcctcgggatg 120
Query: 121 cggattacctcttccttactatacgtacacg 151
|||||||||||||||||||||||||||||||
Sbjct: 121 cggattacctcttccttactatacgtacacg 151
>48383_bna-miR2111b:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 tgaggaccgggtaatctgcatcctgaggtttaaa 49
|||||| | |||||||||||||||||||||||||
Sbjct: 9 tgaggaactggtaatctgcatcctgaggtttaaa 42
Score = 46.1 bits (23), Expect = 7e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 99 atagcttttagtcctcgggatgcggattacctcttcctt 137
|||| ||||| |||||||||| | |||||||||||||||
Sbjct: 73 atagtttttaatcctcgggatacagattacctcttcctt 111
>48382_bna-miR2111b:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 tgaggaccgggtaatctgcatcctgaggtttaaa 49
|||||| | |||||||||||||||||||||||||
Sbjct: 9 tgaggaactggtaatctgcatcctgaggtttaaa 42
Score = 46.1 bits (23), Expect = 7e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 99 atagcttttagtcctcgggatgcggattacctcttcctt 137
|||| ||||| |||||||||| | |||||||||||||||
Sbjct: 73 atagtttttaatcctcgggatacagattacctcttcctt 111
>53775_ptc-miRf11953-akr:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 gggtaatctgcatcctgaggttt 46
|||||||||||||||||||||||
Sbjct: 7 gggtaatctgcatcctgaggttt 29
>53980_ptc-miRf12158-akr:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 ggtaatctgcatcctgaggttt 46
||||||||||||||||||||||
Sbjct: 8 ggtaatctgcatcctgaggttt 29
