miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48378_bna-miR824:pmrd
Length = 632
Score = 1253 bits (632), Expect = 0.0
Identities = 632/632 (100%)
Strand = Plus / Plus
Query: 1 cctcgagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctcgagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgtt 60
Query: 61 caccccactctcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caccccactctcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacact 120
Query: 121 actcttttagaaacaaaactatattttagatgcttttccagcttgatatacgttgttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actcttttagaaacaaaactatattttagatgcttttccagcttgatatacgttgttttg 180
Query: 181 ttatgtatacctgtattctcccggctaccaaaacgttaagaaataaggtgaacatctccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatgtatacctgtattctcccggctaccaaaacgttaagaaataaggtgaacatctccc 240
Query: 241 caaaacctgcatccaattagaaaggtctaggtcacagccattacttgctatctctcgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caaaacctgcatccaattagaaaggtctaggtcacagccattacttgctatctctcgatt 300
Query: 301 aagctattttatttctatcatcatcatcagatcattcaggagttaagtataaaataaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagctattttatttctatcatcatcatcagatcattcaggagttaagtataaaataaaat 360
Query: 361 acattaagtccattcatgacatttctggatgctgcatacataatattttgtttttggact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acattaagtccattcatgacatttctggatgctgcatacataatattttgtttttggact 420
Query: 421 atgccacacttcggacagacatttttcctacgagatgtcaaacctctgtctggagtgtta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgccacacttcggacagacatttttcctacgagatgtcaaacctctgtctggagtgtta 480
Query: 481 gaggtatttcatgatagctaagaacttgaatcttgcactacttagctacactagtttact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaggtatttcatgatagctaagaacttgaatcttgcactacttagctacactagtttact 540
Query: 541 tcatagtaaataacttggggagtggggaaggtgctgggttattagtcccttctcatcgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcatagtaaataacttggggagtggggaaggtgctgggttattagtcccttctcatcgat 600
Query: 601 ggtctagatgtgcgaggtgactctcattgagg 632
||||||||||||||||||||||||||||||||
Sbjct: 601 ggtctagatgtgcgaggtgactctcattgagg 632
>48392_bol-miR824:pmrd
Length = 634
Score = 1053 bits (531), Expect = 0.0
Identities = 612/637 (96%), Gaps = 8/637 (1%)
Strand = Plus / Plus
Query: 1 cctcgagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctcgagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgtt 60
Query: 61 caccccactctcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacact 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caccccactttcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacact 120
Query: 121 actcttttagaaacaaaactatattttagatgcttttccagcttgatatacgttgttttg 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actcttttagaaacaatactatattttagatgcttttccagcttgatatacgttgttttg 180
Query: 181 ttatgtatacctgtattctcccggctaccaaaacgttaagaaataaggtgaacatctccc 240
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 ttatgtatatctgtattatcccggctaccaaaacgttaagaaataaggtgaacat---cc 237
Query: 241 caaaacctgcatccaattagaaaggtctaggtcacagccattacttgctatctctcgatt 300
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct: 238 taaaacctgcatccaattagaaaggtctaggtcacagatattacttgttatctcttgatt 297
Query: 301 aagctattttatttctatcatcatcatcagatcattcaggagttaagtataaaataaaat 360
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 298 aagctattttatttctatcagcatgatcagatcattcaggagttaagtataaactaaaat 357
Query: 361 acattaagtccattcatgacatttctggatgctgcatacataatatt----ttgtttttg 416
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 358 acattaagtccattcatgacatttctggatgctgcatacataatattttccttgtttttg 417
Query: 417 gactatgccacacttcggacagacatttttcctacgagatgtcaaacctctgtctggagt 476
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 418 gactatgccacacttcggacagacattttgcctaagagatgtcaaacctctgtctggagt 477
Query: 477 gttagaggtatttcatgatagctaagaacttgaatcttgcactacttagctacactagtt 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 478 gttagaggtatttcatgatagctaagaacttgaatcttgcactacttagctacactagat 537
Query: 537 tacttcatagtaaataacttggggagt-ggggaaggtgctgggttattagtcccttctca 595
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct: 538 tacttcatagtaaataacttggggagtgggggaaggtgctgggntattattcccttctca 597
Query: 596 tcgatggtctagatgtgcgaggtgactctcattgagg 632
|||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcgatggtctagatgtgcgaggtgactctcattgagg 634
>47057_ath-miR824:pmrd
Length = 689
Score = 85.7 bits (43), Expect = 4e-17
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 586 tcccttctcatcgatggtctagatgtgcgaggtgactctcattgagg 632
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 626 tcccttctcatcgatggtctagatgtgcgaggtgactctcatggagg 672
Score = 81.8 bits (41), Expect = 6e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 5 gagttgtctttcatgtctagaccatttgtgagaagggattttttgtttgcacc 57
||||||||| |||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 18 gagttgtctctcatgtctagaccatttgtgagaagggagtttttgtttacacc 70
Score = 42.1 bits (21), Expect = 5e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 363 attaagtccattcatgacatttctggatgctgcatacataa 403
||||||| |||||||||| |||| |||| |||||||||||
Sbjct: 457 attaagttcattcatgacttttccagatgttgcatacataa 497
