miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54766_vvi-miR156a:pmrd
          Length = 104

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 43 tgttgacagaagagagggagcac 65
          |||||||||||||||||||||||
Sbjct: 8  tgttgacagaagagagggagcac 30

>51601_ptc-miR156k:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 46 tgacagaagagagggagcac 65
          ||||||||||||||||||||
Sbjct: 11 tgacagaagagagggagcac 30

>54572_smo-miR156d:pmrd
          Length = 103

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 43 tgttgacagaagagagggagcac 65
          ||||||||||||| |||||||||
Sbjct: 9  tgttgacagaagacagggagcac 31

>48810_osa-miR156j:pmrd
          Length = 165

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 43 tgttgacagaagagagggagcac 65
          |||||||||||||||| ||||||
Sbjct: 39 tgttgacagaagagagtgagcac 61

>48808_osa-miR156h:pmrd
          Length = 101

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 43 tgttgacagaagagagggagcac 65
          |||||||||||||||| ||||||
Sbjct: 6  tgttgacagaagagagtgagcac 28

>48529_gma-miR156b:pmrd
          Length = 120

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 43 tgttgacagaagagagggagcac 65
          |||||||||||||||| ||||||
Sbjct: 18 tgttgacagaagagagagagcac 40

>46903_aqc-miR529:pmrd
          Length = 125

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 43 tgttgacagaagagagggagcac 65
          |||||||||||||||| ||||||
Sbjct: 15 tgttgacagaagagagagagcac 37

>46857_ahy-miR157k:pmrd
          Length = 139

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 43 tgttgacagaagagagggagcac 65
          |||||||||||||||| ||||||
Sbjct: 19 tgttgacagaagagagagagcac 41