miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48634_gra-miR160a:pmrd
Length = 106
Score = 71.9 bits (36), Expect = 3e-13
Identities = 74/86 (86%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 208 gaaaaagtccggactgcagtttattattaagatggagatcggataaagataacccaaatt 267
|||| |||||||||| |||||||||| |||||| |||| ||| ||||||| | | ||
Sbjct: 24 gaaacagtccggacttcagtttatta---agatggggatctgatgaagataatctgactt 80
Query: 268 gagcatgcctggctccctgtatgcct 293
||||||||||||||||||||||||||
Sbjct: 81 gagcatgcctggctccctgtatgcct 106
>48306_bdi-miR160:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 264 aattgagcatgcctggctccctgtatgcct 293
||||| ||||||||||||||||||||||||
Sbjct: 9 aattgcgcatgcctggctccctgtatgcct 38
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 271 catgcctggctccctgtatgcc 292
||||||||||||||||||||||
Sbjct: 9 catgcctggctccctgtatgcc 30
>54946_zma-miR160i:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgcc 21
>54943_zma-miR160f:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 20 atgcctggctccctgtatgcc 40
>54942_zma-miR160e:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 8 atgcctggctccctgtatgcc 28
>54941_zma-miR160d:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 20 atgcctggctccctgtatgcc 40
>54783_vvi-miR160f:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcc 30
>54760_ttu-miR160b:pmrd
Length = 218
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcct 293
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcct 21
>54675_tae-miR160:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 21 atgcctggctccctgtatgcc 41
>54541_sly-miR160a:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 19 atgcctggctccctgtatgcc 39
>54528_sce-miR160:pmrd
Length = 180
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcct 293
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcct 21
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 11 atgcctggctccctgtatgcc 31
>51611_ptc-miR160d:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcc 30
>51608_ptc-miR160a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcc 30
>48830_osa-miR160e:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcc 30
>48829_osa-miR160d:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 7 atgcctggctccctgtatgcc 27
>48827_osa-miR160b:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 268 gagcatgcctggctccctgtatgcc 292
|||| ||||||||||||||||||||
Sbjct: 25 gagcgtgcctggctccctgtatgcc 49
>48659_hvv-miR160b:pmrd
Length = 47
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcct 293
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcct 21
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 323 atgcctggctccctgtatgcc 343
>48544_gma-miR160o:pmrd
Length = 503
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcct 293
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcct 21
>48543_gma-miR160n:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcct 293
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcct 21
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 25 atgcctggctccctgtatgcc 45
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 25 atgcctggctccctgtatgcc 45
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcc 23
>46936_ath-miR160c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 4 atgcctggctccctgtatgcc 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272 atgcctggctccctgtatgcc 292
|||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcc 23
>54947_zma-miR160m:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54945_zma-miR160h:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54944_zma-miR160g:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54940_zma-miR160c:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcc 26
>54939_zma-miR160b:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcc 40
>54938_zma-miR160a:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgcc 29
>54780_vvi-miR160c:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcc 30
>54759_ttu-miR160a:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54575_smo-miR160b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgcc 32
>54574_smo-miR160a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcc 30
>54408_sbi-miR160e:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54407_sbi-miR160d:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54406_sbi-miR160c:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54405_sbi-miR160b:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54404_sbi-miR160a:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>51610_ptc-miR160c:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcc 30
>51609_ptc-miR160b:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcc 30
>51364_ppt-miR160f:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcc 49
>51363_ppt-miR160e:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcc 49
>51359_ppt-miR160a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcc 30
>51334_pga-miR160:pmrd
Length = 80
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>48833_osa-miR160n:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>48832_osa-miR160m:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>48828_osa-miR160c:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcc 26
>48826_osa-miR160a:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcc 23
>48791_oba-miR160:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcc 23
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcc 25
>48703_mtr-miR160d:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcc 25
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcc 25
>48542_gma-miR160a:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcc 40
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcc 24
>46935_ath-miR160b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcc 24
>46865_aqc-miR160b:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 273 tgcctggctccctgtatgcc 292
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
