miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48637_gra-miR172a:pmrd
Length = 148
Score = 266 bits (134), Expect = 7e-72
Identities = 143/146 (97%)
Strand = Plus / Plus
Query: 3 aatcttgatgatgctgcatgaaaaaacagtggcattagtgtagtactgacctgaccgtgc 62
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 3 aatcttgatgatgctgcatgagagaacagtggcattagtgtagtactgacctgaccgtgc 62
Query: 63 atttgccacggccaatcagggacacgttgtggaggatcgaattcaaccggtttcaccatt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 atttgccacggccaatcagggacacgttgtggaggatcgaattcaaccggtttcaccatt 122
Query: 123 gttctttcctcactaggaaaaaatct 148
|||||||||||||||||||| |||||
Sbjct: 123 gttctttcctcactaggaaagaatct 148
>54755_tca-miR172:pmrd
Length = 240
Score = 149 bits (75), Expect = 1e-36
Identities = 155/182 (85%)
Strand = Plus / Plus
Query: 3 aatcttgatgatgctgcatgaaaaaacagtggcattagtgtagtactgacctgaccgtgc 62
|||| ||||||||||||| | | | |||||||||| ||||| |||||||||||| |||
Sbjct: 3 aatcctgatgatgctgcagtagagancagtggcattggtgtaacactgacctgaccatgc 62
Query: 63 atttgccacggccaatcagggacacgttgtggaggatcgaattcaaccggtttcaccatt 122
||||||| | |||||| |||| || ||| |||||| | |||||||| | |||||||||
Sbjct: 63 gtttgccatgcccaatcggggagaccttgcggaggacctaattcaactcgattcaccatt 122
Query: 123 gttctttcctcactaggaaaaaatctcggatatgcactattccaaaaaataggctgatct 182
| ||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 123 gctctttcctcgctaggaaagaatctaggatatccactattccaaaaaataggctgatct 182
Query: 183 ga 184
||
Sbjct: 183 ga 184
