miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54675_tae-miR160:pmrd
Length = 148
Score = 83.8 bits (42), Expect = 8e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 303 agaggtgaaaacaatgggatatgcctggctccctgtatgcca 344
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaggtgaaaacaatgggatatgcctggctccctgtatgcca 42
>48829_osa-miR160d:pmrd
Length = 142
Score = 54.0 bits (27), Expect = 7e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 318 gggatatgcctggctccctgtatgcca 344
|||||||||||||||||||||||||||
Sbjct: 2 gggatatgcctggctccctgtatgcca 28
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 3e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 315 aatgggatatgcctggctccctgtatgcca 344
|||||| |||||||||||||||||||||||
Sbjct: 3 aatgggttatgcctggctccctgtatgcca 32
>51611_ptc-miR160d:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 3e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 315 aatgggatatgcctggctccctgtatgcca 344
|||||| |||||||||||||||||||||||
Sbjct: 2 aatgggttatgcctggctccctgtatgcca 31
>48830_osa-miR160e:pmrd
Length = 114
Score = 52.0 bits (26), Expect = 3e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 318 gggatatgcctggctccctgtatgcc 343
||||||||||||||||||||||||||
Sbjct: 5 gggatatgcctggctccctgtatgcc 30
>54941_zma-miR160d:pmrd
Length = 142
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 320 gatatgcctggctccctgtatgcca 344
|||||||||||||||||||||||||
Sbjct: 17 gatatgcctggctccctgtatgcca 41
>51608_ptc-miR160a:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 1e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 316 atgggatatgcctggctccctgtatgcca 344
||||| |||||||||||||||||||||||
Sbjct: 3 atgggttatgcctggctccctgtatgcca 31
>54942_zma-miR160e:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 5e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 6 atatgcctggctccctgtatgcca 29
>54783_vvi-miR160f:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 5e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 8 atatgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 5e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 17 atatgcctggctccctgtatgcca 40
>54943_zma-miR160f:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcc 343
|||||||||||||||||||||||
Sbjct: 18 atatgcctggctccctgtatgcc 40
>48397_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>46936_ath-miR160c:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 3 tatgcctggctccctgtatgcca 25
>46934_ath-miR160a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>54946_zma-miR160i:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 7e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 323 atgcctggctccctgtatgcca 344
||||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgcca 22
>54940_zma-miR160c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 7e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 319 ggatatgcctggctccctgtatgcca 344
|||| |||||||||||||||||||||
Sbjct: 2 ggatgtgcctggctccctgtatgcca 27
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 7e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 323 atgcctggctccctgtatgcca 344
||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcca 31
>54780_vvi-miR160c:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 7e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 315 aatgggatatgcctggctccctgtatgcca 344
|||||| | |||||||||||||||||||||
Sbjct: 2 aatgggttgtgcctggctccctgtatgcca 31
>54947_zma-miR160m:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54945_zma-miR160h:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54944_zma-miR160g:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54939_zma-miR160b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>54938_zma-miR160a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgcca 30
>54759_ttu-miR160a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54575_smo-miR160b:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgcca 33
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54408_sbi-miR160e:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54407_sbi-miR160d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54406_sbi-miR160c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54405_sbi-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54404_sbi-miR160a:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>51610_ptc-miR160c:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51364_ppt-miR160f:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>51363_ppt-miR160e:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>51359_ppt-miR160a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51334_pga-miR160:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48833_osa-miR160n:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48832_osa-miR160m:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48828_osa-miR160c:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcca 27
>48827_osa-miR160b:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>48826_osa-miR160a:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>48791_oba-miR160:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48635_gra-miR160b:pmrd
Length = 293
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 323 atgcctggctccctgtatgcc 343
|||||||||||||||||||||
Sbjct: 272 atgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 323 atgcctggctccctgtatgcc 343
|||||||||||||||||||||
Sbjct: 85 atgcctggctccctgtatgcc 105
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>48306_bdi-miR160:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 323 atgcctggctccctgtatgcc 343
|||||||||||||||||||||
Sbjct: 17 atgcctggctccctgtatgcc 37
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>46935_ath-miR160b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 tgcctggctccctgtatgcca 344
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
