miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48670_ini-miR157b:pmrd
Length = 183
Score = 331 bits (167), Expect = 2e-91
Identities = 179/183 (97%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcatgctagaaattacattgataagctatgtggttcagagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcatgctagaaattacattgataagctatgtggttcagagacc 60
Query: 61 aatcttcttatgagttccaataaggagttggtttgtccccccactggtattatgtcttca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61 aatcttcttatgagttccaataaggagttggtttgtccccccactggtattacgtcttca 120
Query: 121 ggttgacccttcaccatgagaatcatatgtaattctccggcggcgctcattgtgacctgc 180
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 ggttgacccttcaccacgaggatcatatgtaattctcctgcggcgctcattgtgacctgc 180
Query: 181 caa 183
|||
Sbjct: 181 caa 183
>48669_ini-miR157a:pmrd
Length = 126
Score = 242 bits (122), Expect = 1e-64
Identities = 125/126 (99%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcatgctagaaattacattgataagctatgtggttcagagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcatgctagaaattacattgataagctatgtggttcagagacc 60
Query: 61 aatcttcttatgagttccaataaggagttggtttgtccccccactggtattatgtcttca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61 aatcttcttatgagttccaataaggagttggtttgtccccccactggtattacgtcttca 120
Query: 121 ggttga 126
||||||
Sbjct: 121 ggttga 126
>54536_sly-miR157b:pmrd
Length = 430
Score = 141 bits (71), Expect = 3e-34
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 134 ccatgagaatcatatgtaattctccggcggcgctcattgtgacctgccaatcgcctccgg 193
|||||||| |||||||||||| | |||||||||||||||||||||||||| ||||| |||
Sbjct: 109 ccatgagagtcatatgtaattttacggcggcgctcattgtgacctgccaaacgccttcgg 168
Query: 194 caactcctcttagcttcatcaaactgggctaattcatgaaacctgctgcattgctgacag 253
|||||||||||||| |||||||||| ||||| |||||| ||||| ||||||||||||
Sbjct: 169 caactcctcttagcatcatcaaactctgctaacagatgaaatctgctacattgctgacag 228
Query: 254 aagcgct 260
|| ||||
Sbjct: 229 aatcgct 235
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcatgct 24
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcatgct 24
>54535_sly-miR157a:pmrd
Length = 53
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcatgct 24
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcatgct 24
>54537_sly-miR157c:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcat 21
|||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagcat 123
>51323_pco-miR157:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcat 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcat 21
>48677_lja-miR157c:pmrd
Length = 460
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcat 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcat 21
>54774_vvi-miR156i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagca 30
>54772_vvi-miR156g:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagca 30
>54771_vvi-miR156f:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagca 30
>54661_stu-miR157a:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54534_sly-miR156c:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54533_sly-miR156b:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54532_sly-miR156a:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 2 ttgacagaagatagagagca 21
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 3 ttgacagaagatagagagca 22
>51600_ptc-miR156j:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagca 30
>51599_ptc-miR156i:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagca 30
>51598_ptc-miR156h:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagca 30
>51597_ptc-miR156g:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagca 30
>48790_nta-miR157:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48697_mtr-miR156h:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagca 25
>48696_mtr-miR156f:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagca 25
>48695_mtr-miR156e:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagca 25
>48675_lja-miR157a:pmrd
Length = 58
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48642_han-miR157a:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48631_gra-miR157b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 5 ttgacagaagatagagagca 24
>48630_gra-miR157a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 5 ttgacagaagatagagagca 24
>48537_gma-miR157c:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 84 ttgacagaagatagagagca 65
>48532_gma-miR156e:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 21 ttgacagaagatagagagca 40
>48531_gma-miR156d:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 21 ttgacagaagatagagagca 40
>48530_gma-miR156c:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 146 ttgacagaagatagagagca 165
>48393_bra-miR157a:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 14 ttgacagaagatagagagca 33
>48384_bol-miR157a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagca 25
>48338_bna-miR156c:pmrd
Length = 155
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 18 ttgacagaagatagagagca 37
>48337_bna-miR156b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 25 ttgacagaagatagagagca 44
>46926_ath-miR157c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 24 ttgacagaagatagagagca 43
>46925_ath-miR157b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 19 ttgacagaagatagagagca 38
>46924_ath-miR157a:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 4 ttgacagaagatagagagca 23
