miRNEST 2.0, an integrative microRNA resource :: BLAST
>48824_osa-miR159f:pmrd
Length = 188
Score = 220 bits (111), Expect = 3e-58
Identities = 170/191 (89%), Gaps = 9/191 (4%)
Strand = Plus / Plus
Query: 7 gaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgatt 66
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggtt 66
Query: 67 catggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgc 126
|||||||||||||| |||||||| | |||||| |||||||||||||||||||
Sbjct: 67 catggatacctctgcagtgcatgtc---------gtaggcttgcacttgcatgggtttgc 117
Query: 127 atgacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 118 atgacccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctct 177
Query: 187 acatctctctc 197
||| |||||||
Sbjct: 178 acacctctctc 188
>48822_osa-miR159d:pmrd
Length = 189
Score = 214 bits (108), Expect = 2e-56
Identities = 159/177 (89%), Gaps = 8/177 (4%)
Strand = Plus / Plus
Query: 10 gaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcat 69
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 10 gaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcat 69
Query: 70 ggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatg 129
||||||||||| ||| |||| | | ||||||||||||||||||||||||||||
Sbjct: 70 ggatacctctgcagttcatgccgg--------taggcctgcacttgcatgggtttgcatg 121
Query: 130 acccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 122 acctgggagatgaacctgccattgtgttcctctattgattggattgaagggagctcc 178
>48823_osa-miR159e:pmrd
Length = 191
Score = 210 bits (106), Expect = 3e-55
Identities = 154/169 (91%), Gaps = 7/169 (4%)
Strand = Plus / Plus
Query: 18 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatggatacct 77
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
Query: 78 ctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacccggga 137
|||||||||| |||| || ||| ||| | ||| |||||||||||||||| |||||
Sbjct: 79 ctggagtgcagggca--aa-----tagtcctaccctttcatgggtttgcatgactcggga 131
Query: 138 gatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gatgaacccgccattgtcttcctctattgattggattgaagggagctcc 180
>54403_sbi-miR159b:pmrd
Length = 253
Score = 107 bits (54), Expect = 3e-24
Identities = 145/174 (83%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 61 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 120
Query: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
| ||||| ||||| | | | || || ||||||||||||||||| |||||||||
Sbjct: 121 tgcctctctggtgca-gcaatgactgatgctcacctgcacttgcatgggtgtgcatgacc 179
Query: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||||||||||||||||||| |||| | || || |||||||||||||||||||
Sbjct: 180 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 233
>54643_sof-miR319b:pmrd
Length = 176
Score = 99.6 bits (50), Expect = 8e-22
Identities = 144/174 (82%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
Query: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
| ||||| ||||| | | | | || ||||||||||||||||| |||||||||
Sbjct: 63 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 121
Query: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||||||||||||||||||| |||| | || || |||||||||||||||||||
Sbjct: 122 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 175
>54630_sof-miR159c:pmrd
Length = 238
Score = 99.6 bits (50), Expect = 8e-22
Identities = 144/174 (82%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
Query: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
| ||||| ||||| | | | | || ||||||||||||||||| |||||||||
Sbjct: 106 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 164
Query: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||||||||||||||||||| |||| | || || |||||||||||||||||||
Sbjct: 165 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 218
>54933_zma-miR159d:pmrd
Length = 217
Score = 93.7 bits (47), Expect = 5e-20
Identities = 146/178 (82%), Gaps = 7/178 (3%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| | ||||||| || ||||||||||| ||||||||
Sbjct: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
Query: 73 tacctctggagtgca----tggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
||||||| ||||| |||| | ||||| ||||||||||||||||| |||||
Sbjct: 83 tacctctctggtgcagcaatggccgagatgctca---cctgcacttgcatgggtgtgcat 139
Query: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||||||||||| ||||| ||||| |||| | || || |||||||||||||||||||
Sbjct: 140 gacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctcc 197
>55054_zma-miR319m:pmrd
Length = 178
Score = 91.7 bits (46), Expect = 2e-19
Identities = 147/178 (82%), Gaps = 7/178 (3%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 3 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 62
Query: 73 tacctctggagtgc----atggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
||||||| |||| ||||| || |||| | |||||||||||||||| |||||
Sbjct: 63 tacctctctggtgcagcaatggccgc--tgct-cacctctgcacttgcatgggtgtgcat 119
Query: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
|||||||||||||| ||| |||| |||| | || || |||||||||||||||||||
Sbjct: 120 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 177
>54936_zma-miR159g:pmrd
Length = 180
Score = 91.7 bits (46), Expect = 2e-19
Identities = 147/178 (82%), Gaps = 7/178 (3%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 4 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 63
Query: 73 tacctctggagtgc----atggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
||||||| |||| ||||| || |||| | |||||||||||||||| |||||
Sbjct: 64 tacctctctggtgcagcaatggccgc--tgct-cacctctgcacttgcatgggtgtgcat 120
Query: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
|||||||||||||| ||| |||| |||| | || || |||||||||||||||||||
Sbjct: 121 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 178
>54932_zma-miR159c:pmrd
Length = 217
Score = 91.7 bits (46), Expect = 2e-19
Identities = 147/178 (82%), Gaps = 7/178 (3%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 23 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 82
Query: 73 tacctctggagtgc----atggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
||||||| |||| ||||| || |||| | |||||||||||||||| |||||
Sbjct: 83 tacctctctggtgcagcaatggccgc--tgct-cacctctgcacttgcatgggtgtgcat 139
Query: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
|||||||||||||| ||| |||| |||| | || || |||||||||||||||||||
Sbjct: 140 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 197
>54935_zma-miR159f:pmrd
Length = 181
Score = 79.8 bits (40), Expect = 7e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 107 ctgcacttgcatgggtttgcatgacccgggagatgaacccaccattgtcttcctctattg 166
|||||||||||||||| ||||||||||||||||||| ||| |||| |||| | || ||
Sbjct: 100 ctgcacttgcatgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtg 159
Query: 167 attggattgaagggagctcc 186
|||||||||||||||||||
Sbjct: 160 cttggattgaagggagctcc 179
>54777_vvi-miR159c:pmrd
Length = 190
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctccacatctctctc 197
|||||||||||||||||| ||| |||||||
Sbjct: 161 ttggattgaagggagctctacacctctctc 190
>51562_pta-miR319:pmrd
Length = 206
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 168 ttggattgaagggagctccac 188
|||||||||||||||||||||
Sbjct: 26 ttggattgaagggagctccac 6
>51553_pta-miR159a:pmrd
Length = 210
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctccac 188
|||||||||||||||||||||
Sbjct: 185 ttggattgaagggagctccac 205
>48728_mtr-miR319b:pmrd
Length = 42
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctccacatct 192
|||||||||||||||||| ||||||
Sbjct: 1 ttggattgaagggagctctacatct 25
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctccacatct 192
|||||||||||||||||| ||||||
Sbjct: 2 ttggattgaagggagctctacatct 26
>51547_psi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctcca 187
||||||||||||||||||||
Sbjct: 174 ttggattgaagggagctcca 193
>46932_ath-miR159b:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctccacatctctc 195
|||||||||||||||||| ||||||||
Sbjct: 169 ttggattgaagggagctcttcatctctc 196
