miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51283_osa-miRf12068-akr:pmrd
Length = 158
Score = 123 bits (62), Expect = 4e-29
Identities = 127/147 (86%), Gaps = 5/147 (3%)
Strand = Plus / Plus
Query: 8 catacggctgcttaagacgcccgtatggaaaaatgggcctcttaagagatccgcatgaaa 67
|||||||| |||||| |||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 7 catacggccacttaagtggcccgtatgggaaaat---cctcttaagaggtccgcatgcaa 63
Query: 68 aaacaaggtcattttt--gcacgcggctcatttaagcgcccgcatagaaaaatcgatttt 125
||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||||||||
Sbjct: 64 aaataaggtcatttttttgcatgcggctcacttaagcgcccgcatggaaaaatcgatttt 123
Query: 126 tccatacgggcgtcttaaggagccgta 152
|||||||| || |||||| |||||||
Sbjct: 124 tccatacgagccacttaagcagccgta 150
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 2 tttttgcatacggctgcttaagacgcccgtatggaaaaat 41
|||| ||||||||||||||||| || |||||||||||||
Sbjct: 158 ttttcgcatacggctgcttaagtggctcgtatggaaaaat 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 112 gaaaaatcgatttttccatacgggcg 137
||||||||||||||||||| ||||||
Sbjct: 125 gaaaaatcgatttttccatgcgggcg 100
>51158_osa-miRf11943-akr:pmrd
Length = 72
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 113 aaaaatcgatttttccatacgggcgtcttaaggagccgta 152
||||||||||||||||||||| ||||||||||||||||||
Sbjct: 30 aaaaatcgatttttccatacgagcgtcttaaggagccgta 69
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 112 gaaaaatcgatttttccatacgggcgtcttaaggagcc 149
||||||||||||||| |||||||||||||||| |||||
Sbjct: 44 gaaaaatcgatttttacatacgggcgtcttaatgagcc 7
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 7 gcatacggctgcttaagacgcccgtatggaaaaat 41
|||||||||| |||||||||| |||||||||||||
Sbjct: 72 gcatacggctccttaagacgctcgtatggaaaaat 38
>50341_osa-miRf11126-akr:pmrd
Length = 128
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 82 ttgcacgcggctcatttaagcgcccgcatagaaaaatcgatttttccatac 132
||||| |||||||| |||||||||||||||||||||| |||||| |||||
Sbjct: 57 ttgcatgcggctcacctaagcgcccgcatagaaaaatcaattttttcatac 107
Score = 58.0 bits (29), Expect = 2e-09
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 9 atacggctgcttaagacgcccgtat-ggaaaaatgggcctcttaagaga 56
||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 1 atacggctgcttaagtggcccgtatgggaaaaacgggcctcttaagaga 49
