miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50501_osa-miRf11286-akr:pmrd
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 60
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tacatgtcgaactgcgtcagttcgacagggt 91
>49303_osa-miRf10088-akr:pmrd
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 60
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tacatgtcgaactgcgtcagttcgacagggt 91
>48998_osa-miR439i:pmrd
Length = 103
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 96 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 37
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 36 tacatgtcgaactgcgtcagttcgacagggt 6
>48995_osa-miR439f:pmrd
Length = 96
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 95 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 36
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 35 tacatgtcgaactgcgtcagttcgacagggt 5
>48994_osa-miR439e:pmrd
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 97 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 38
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 37 tacatgtcgaactgcgtcagttcgacagggt 7
>48992_osa-miR439c:pmrd
Length = 93
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 92 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 33
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 32 tacatgtcgaactgcgtcagttcgacagggt 2
>48990_osa-miR439a:pmrd
Length = 93
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 92 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 33
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 32 tacatgtcgaactgcgtcagttcgacagggt 2
>50549_osa-miRf11334-akr:pmrd
Length = 91
Score = 165 bits (83), Expect = 7e-42
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagc 60
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tacatgtcgaactgcgtcagttcgacagggt 91
>49259_osa-miRf10044-akr:pmrd
Length = 93
Score = 165 bits (83), Expect = 7e-42
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 2 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacaag 61
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||||||||||||||||||||||
Sbjct: 62 tacatgtcgaactgcgtcagttcgacagggt 92
>48997_osa-miR439h:pmrd
Length = 99
Score = 165 bits (83), Expect = 7e-42
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 98 accctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 39
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
||||||||||||||||| |||||||||||||
Sbjct: 38 tacatgtcgaactgcgtgagttcgacagggt 8
>48996_osa-miR439g:pmrd
Length = 88
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 3 cctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacaggta 62
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 88 cctgtcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacaggta 29
Query: 63 catgtcgaactgcgtcagttcgacagg 89
|||||||||||||||||||||||||||
Sbjct: 28 catgtcgaactgcgtcagttcgacagg 2
>50110_osa-miRf10895-akr:pmrd
Length = 91
Score = 157 bits (79), Expect = 2e-39
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 1 accctgtcgaacaaccgcggtttgacagggatacctatcgaacaaccacagttcgacagg 60
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
||||||||||| |||||||||||||||||||
Sbjct: 61 tacatgtcgaattgcgtcagttcgacagggt 91
>48993_osa-miR439d:pmrd
Length = 98
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 97 accctatcgaacaaccgcggttcgacagggatacctatcgaacaaccacagttcgacagg 38
Query: 61 tacatgtcgaactgcgtcagttcgacagggt 91
||||||||||||| ||| |||||||||||||
Sbjct: 37 tacatgtcgaactacgtgagttcgacagggt 7
>48991_osa-miR439b:pmrd
Length = 60
Score = 91.7 bits (46), Expect = 8e-20
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 3 cctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct: 60 cctgtcgaacaaccgcggttcgacaggggtacctatcgaacaaccacaattcgacagg 3
>49302_osa-miRf10087-akr:pmrd
Length = 103
Score = 83.8 bits (42), Expect = 2e-17
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgaca-g 59
||||| ||||||||||| ||||||||| || || |||||||||||||||||||||| | |
Sbjct: 7 accctatcgaacaaccgtggttcgacaagg-tacctatcgaacaaccacagttcgatagg 65
Query: 60 gtacatgtcgaactgcgtcagttcgacagg 89
|||| |||||||||||| |||||||||||
Sbjct: 66 gtacctgtcgaactgcggtagttcgacagg 95
>50592_osa-miRf11377-akr:pmrd
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 75/84 (89%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 7 tcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgaca-ggtacat 65
||||||||||| ||||||||| || || |||||||||||||||||||||| | ||||| |
Sbjct: 5 tcgaacaaccgtggttcgacaagg-tacctatcgaacaaccacagttcgatagggtacct 63
Query: 66 gtcgaactgcgtcagttcgacagg 89
||||||||||| |||||||||||
Sbjct: 64 gtcgaactgcggtagttcgacagg 87
>49290_osa-miRf10075-akr:pmrd
Length = 104
Score = 79.8 bits (40), Expect = 3e-16
Identities = 80/91 (87%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgaca-- 58
||||| ||||||||||| ||||||||| || || |||||||||||||||||||||| |
Sbjct: 7 accctatcgaacaaccgtggttcgacaagg-tacctatcgaacaaccacagttcgatagg 65
Query: 59 ggtacatgtcgaactgcgtcagttcgacagg 89
||||| |||||||||||| |||||||||||
Sbjct: 66 ggtacctgtcgaactgcggtagttcgacagg 96
>49289_osa-miRf10074-akr:pmrd
Length = 104
Score = 79.8 bits (40), Expect = 3e-16
Identities = 80/91 (87%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgaca-- 58
||||| ||||||||||| ||||||||| || || |||||||||||||||||||||| |
Sbjct: 7 accctatcgaacaaccgtggttcgacaagg-tacctatcgaacaaccacagttcgatagg 65
Query: 59 ggtacatgtcgaactgcgtcagttcgacagg 89
||||| |||||||||||| |||||||||||
Sbjct: 66 ggtacctgtcgaactgcggtagttcgacagg 96
>50749_osa-miRf11534-akr:pmrd
Length = 106
Score = 73.8 bits (37), Expect = 2e-14
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 3 cctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacaggta 62
||||||||||||||| |||||||||||| | |||||||||||| ||||||| |||||
Sbjct: 10 cctgtcgaacaaccgtggttcgacaggggaacctatcgaacaactgtagttcgataggta 69
Query: 63 catgtcgaactgcgtcagttcgacagggt 91
| | |||||| | | ||||||||||||||
Sbjct: 70 cctatcgaaccgtggcagttcgacagggt 98
>50780_osa-miRf11565-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
||||| ||||||||||| ||||||| | || || |||||||||||||| ||||||| |||
Sbjct: 7 accctatcgaacaaccgtggttcgatacgg-tacctatcgaacaaccatagttcgatagg 65
Query: 61 -tacatgtcgaactgcgtcagttcgacagg 89
||| |||||||||||| |||||||||||
Sbjct: 66 gtacttgtcgaactgcggtagttcgacagg 95
>49260_osa-miRf10045-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgaca-g 59
||||| ||||||||||| ||||||| | | || |||||||||||||||||||||| | |
Sbjct: 7 accctatcgaacaaccgtggttcgataaag-tacctatcgaacaaccacagttcgatagg 65
Query: 60 gtacatgtcgaactgcgtcagttcgacagg 89
|||| |||||||||||| |||||||||||
Sbjct: 66 gtacctgtcgaactgcggtagttcgacagg 95
>50692_osa-miRf11477-akr:pmrd
Length = 67
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 accctgtcgaacaaccgcggttcgacagg 29
|||||||||||||||||| ||||||||||
Sbjct: 39 accctgtcgaacaaccgcagttcgacagg 67
>50502_osa-miRf11287-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
|||||||||||| || | ||||||||||| || ||||||||| || ||||||||||||
Sbjct: 60 accctgtcgaactgccccagttcgacaggggtacctatcgaactgccccagttcgacagg 1
>49465_osa-miRf10250-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 1 accctgtcgaacaaccgcggttcgacagggatatctatcgaacaaccacagttcgacagg 60
|||||||||||| || | ||||||||||| || ||||||||| || ||||||||||||
Sbjct: 66 accctgtcgaactgccccagttcgacaggggtacctatcgaactgccccagttcgacagg 7
Score = 40.1 bits (20), Expect = 3e-04
Identities = 40/44 (90%), Gaps = 2/44 (4%)
Strand = Plus / Plus
Query: 49 cagttcgacagg-tacatgtcgaactgcgtcagttcgacagggt 91
|||||||||||| ||| |||||||||| | ||||||||||||||
Sbjct: 53 cagttcgacagggtac-tgtcgaactggggcagttcgacagggt 95
>48999_osa-miR439j:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 tcgaacaaccgcggttcgaca 27
|||||||||||||||||||||
Sbjct: 113 tcgaacaaccgcggttcgaca 93
>50747_osa-miRf11532-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 49 cagttcgacaggtaca-tgtcgaactgcgtcagttcgacagggt 91
||||||||||||||| | ||||||||| || ||||||||||||
Sbjct: 50 cagttcgacaggtaccctttcgaactgcctccgttcgacagggt 7
