miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49614_osa-miRf10399-akr:pmrd
Length = 79
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 1 gggcatgtttgggggagtttctggcaactgcagcttctcatagaatcttcaattgccaga 60
|||| |||||||||||| |||| ||| |||||||||||| ||||||||||| ||||||||
Sbjct: 79 gggcctgtttgggggagcttctagcagctgcagcttctcctagaatcttcagttgccaga 20
Query: 61 agctcccc 68
||||||||
Sbjct: 19 agctcccc 12
>50055_osa-miRf10840-akr:pmrd
Length = 77
Score = 79.8 bits (40), Expect = 3e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 8 tttgggggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctccc 67
|||||||||| |||| |||||||||||||||| |||||||| || |||||||||||| ||
Sbjct: 70 tttgggggagcttctagcaactgcagcttctcctagaatctccagttgccagaagcttcc 11
Query: 68 caatcagt 75
||| ||||
Sbjct: 10 caaacagt 3
>51253_osa-miRf12038-akr:pmrd
Length = 71
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 6 tgtttgggggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctc 65
|||||| ||||| |||| ||| ||||||||||| |||||| |||| |||||||||||||
Sbjct: 70 tgtttgagggagcttctagcagctgcagcttctactagaattttcagttgccagaagctc 11
Query: 66 ccc 68
|||
Sbjct: 10 ccc 8
>51252_osa-miRf12037-akr:pmrd
Length = 81
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 6 tgtttgggggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctc 65
|||||| ||||| |||| ||| ||||||||||| |||||| |||| |||||||||||||
Sbjct: 74 tgtttgagggagcttctagcagctgcagcttctactagaattttcagttgccagaagctc 15
Query: 66 ccc 68
|||
Sbjct: 14 ccc 12
>49731_osa-miRf10516-akr:pmrd
Length = 78
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 6 tgtttgggggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctc 65
||||| |||||| |||| ||| |||||||||||| |||||||| | |||||||||||||
Sbjct: 73 tgttttggggagcttctagcagctgcagcttctcctagaatctcaagttgccagaagctc 14
Query: 66 ccc 68
|||
Sbjct: 13 ccc 11
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgtttgggggagtttctggcaact 29
|||||||||||| |||||||||||
Sbjct: 5 tgtttgggggagcttctggcaact 28
>49730_osa-miRf10515-akr:pmrd
Length = 78
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 6 tgtttgggggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctc 65
||||| |||||| |||| ||| |||||||||||| |||||||| | |||||||||||||
Sbjct: 73 tgttttggggagcttctagcagctgcagcttctcctagaatctcaagttgccagaagctc 14
Query: 66 ccc 68
|||
Sbjct: 13 ccc 11
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgtttgggggagtttctggcaact 29
|||||||||||| |||||||||||
Sbjct: 5 tgtttgggggagcttctggcaact 28
>50404_osa-miRf11189-akr:pmrd
Length = 77
Score = 58.0 bits (29), Expect = 9e-10
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 12 ggggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctcccc 68
|||||| |||| ||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct: 11 ggggagcttctagcagctgcagcttcttctaaaatcttcagttgccagaagctcccc 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 6 tgtttgggggagtttctggcaactg 30
|||||||||||| ||||||||||||
Sbjct: 73 tgtttgggggagcttctggcaactg 49
>50403_osa-miRf11188-akr:pmrd
Length = 77
Score = 58.0 bits (29), Expect = 9e-10
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 12 ggggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctcccc 68
|||||| |||| ||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct: 67 ggggagcttctagcagctgcagcttcttctaaaatcttcagttgccagaagctcccc 11
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tgtttgggggagtttctggcaactg 30
|||||||||||| ||||||||||||
Sbjct: 5 tgtttgggggagcttctggcaactg 29
>49428_osa-miRf10213-akr:pmrd
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 14 ggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctcccc 68
|||| |||| |||||| ||||||||| |||||| | || ||||||||||||||||
Sbjct: 61 ggagcttctagcaactacagcttctcctagaatttccagttgccagaagctcccc 7
>49592_osa-miRf10377-akr:pmrd
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 12 ggggagtttctggcaactgcagcttctcatagaatcttcaattgccagaagctcccc 68
|||||| |||| ||| |||||||||||| ||||||| ||| |||| |||||||||||
Sbjct: 14 ggggagcttctagcagctgcagcttctcctagaatc-tcagttgctagaagctcccc 69
