miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50777_osa-miRf11562-akr:pmrd
Length = 161
Score = 93.7 bits (47), Expect = 4e-20
Identities = 122/147 (82%), Gaps = 5/147 (3%)
Strand = Plus / Plus
Query: 7 catacggccacttaagtggcccgtatgggaaaat---cctcttaagaggtccgcatgcaa 63
|||||||| |||||| |||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 8 catacggctgcttaagacgcccgtatggaaaaatgggcctcttaagagatccgcatgaaa 67
Query: 64 aaataaggtcannnnnnngcatgcggctcacttaagcgcccgcatggaaaaatcgatttt 123
||| ||||||| ||| |||||||| |||||||||||||| ||||||||||||||
Sbjct: 68 aaacaaggtcattttt--gcacgcggctcatttaagcgcccgcatagaaaaatcgatttt 125
Query: 124 tccatacgagccacttaagcagccgta 150
|||||||| || |||||| |||||||
Sbjct: 126 tccatacgggcgtcttaaggagccgta 152
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 119 atttttccatacgagccacttaagcagccgtatgcgaaaa 158
||||||||||||| || ||||||||||||||||| ||||
Sbjct: 41 atttttccatacgggcgtcttaagcagccgtatgcaaaaa 2
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 100 cgcccgcatggaaaaatcgatttttc 125
|||||| |||||||||||||||||||
Sbjct: 137 cgcccgtatggaaaaatcgatttttc 112
>50341_osa-miRf11126-akr:pmrd
Length = 128
Score = 75.8 bits (38), Expect = 9e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 82 gcatgcggctcacttaagcgcccgcatggaaaaatcgatttttccatacgagccacttaa 141
||||||||||||| ||||||||||||| |||||||| |||||| ||||| |||||||||
Sbjct: 59 gcatgcggctcacctaagcgcccgcatagaaaaatcaattttttcatacaggccacttaa 118
Query: 142 gcagccgtat 151
| || |||||
Sbjct: 119 gaagacgtat 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 atacggccacttaagtggcccgtatgggaaaa 39
||||||| |||||||||||||||||||||||
Sbjct: 1 atacggctgcttaagtggcccgtatgggaaaa 32
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 120 tttttccatacgagccacttaagcagccgtat 151
|||| ||||||| |||||||||||||||||||
Sbjct: 32 ttttcccatacgggccacttaagcagccgtat 1
>51158_osa-miRf11943-akr:pmrd
Length = 72
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 100 cgcccgcatggaaaaatcgatttttccatacgagccacttaagcagccgtatgc 153
|||||| ||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 19 cgcccgtatgtaaaaatcgatttttccatacgagcgtcttaaggagccgtatgc 72
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 107 atggaaaaatcgatttttccatacg 131
|||||||||||||||||| ||||||
Sbjct: 47 atggaaaaatcgatttttacatacg 23
>49256_osa-miRf10041-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 44 cttaagaggtccgcatgcaaaaataa 69
|||||||||||||||||| |||||||
Sbjct: 71 cttaagaggtccgcatgcgaaaataa 46
>49177_osa-miR1880:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 112 aaaatcgatttttccatacgagccacttaagca 144
|||||||||||||||| || ||||||||||||
Sbjct: 13 aaaatcgatttttccaagcgggccacttaagca 45
>50826_osa-miRf11611-akr:pmrd
Length = 58
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 44 cttaagaggtccgcatgcaaaaat 67
|||||||||||||| |||||||||
Sbjct: 26 cttaagaggtccgcctgcaaaaat 3
>50324_osa-miRf11109-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 103 ccgcatggaaaaatcgatttttcc 126
||||| ||||||||||||||||||
Sbjct: 85 ccgcacggaaaaatcgatttttcc 62
>50323_osa-miRf11108-akr:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 103 ccgcatggaaaaatcgatttttcc 126
||||| ||||||||||||||||||
Sbjct: 88 ccgcacggaaaaatcgatttttcc 65
>50322_osa-miRf11107-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 103 ccgcatggaaaaatcgatttttcc 126
||||| ||||||||||||||||||
Sbjct: 85 ccgcacggaaaaatcgatttttcc 62
