miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50438_osa-miRf11223-akr:pmrd
Length = 109
Score = 168 bits (85), Expect = 5e-43
Identities = 103/109 (94%)
Strand = Plus / Plus
Query: 1 cgaaaagaatcttcgcaggcggggcggctgtccgcctgtaagctaacgactgtgaagatc 60
||||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct: 1 cgaaaagggtcttcgcaggcggggcggccgtccgcctgtaagccaacgactatgaagatc 60
Query: 61 gccgatcttcgcaggcggggcggccgtccgcctgcgaagataattttcg 109
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 gccgatcttcgcaggcggggaggccgtccgcctgcgaagataattttcg 109
>51265_osa-miRf12050-akr:pmrd
Length = 108
Score = 161 bits (81), Expect = 1e-40
Identities = 103/109 (94%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 1 cgaaaagaatcttcgcaggcggggcggctgtccgcctgtaagctaacgactgtgaagatc 60
||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 108 cgaaaagggtcttcgcaggcggggcggccgtccgcctgtaagccaacgactgtgaagatc 49
Query: 61 gccgatcttcgcaggcggggcggccgtccgcctgcgaagataattttcg 109
| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 48 g-cgatcttcgcaggcggggcggccgtccgtctgcgaagataattttcg 1
>51145_osa-miRf11930-akr:pmrd
Length = 109
Score = 161 bits (81), Expect = 1e-40
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 1 cgaaaagaatcttcgcaggcggggcggctgtccgcctgtaagctaacgactgtgaagatc 60
||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 1 cgaaaagggtcttcgcaggcggggcggctatccgcctgtaagccaacgactgtgaagatc 60
Query: 61 gccgatcttcgcaggcggggcggccgtccgcctgcgaagataattttcg 109
||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 61 tccgatcttcacaggcggggcggccgtccgcctgcgaagattattttcg 109
>50093_osa-miRf10878-akr:pmrd
Length = 107
Score = 157 bits (79), Expect = 2e-39
Identities = 94/99 (94%)
Strand = Plus / Plus
Query: 10 tcttcgcaggcggggcggctgtccgcctgtaagctaacgactgtgaagatcgccgatctt 69
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 9 tcttcgcaggcggggcggccatccgcctgtaagcaaacgactgtgaagatcgccgatctt 68
Query: 70 cgcaggcggggcggccgtccgcctgcgaagataattttc 108
||||||||||||||||||||| ||||||||||| |||||
Sbjct: 69 cgcaggcggggcggccgtccgtctgcgaagatagttttc 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 atcttcgcaggcggggcggctgtccg 34
|||||||||||||||||||| |||||
Sbjct: 64 atcttcgcaggcggggcggccgtccg 89
>51116_osa-miRf11901-akr:pmrd
Length = 105
Score = 139 bits (70), Expect = 5e-34
Identities = 91/98 (92%)
Strand = Plus / Minus
Query: 10 tcttcgcaggcggggcggctgtccgcctgtaagctaacgactgtgaagatcgccgatctt 69
||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct: 98 tcttcacaggcggggcggccgtccgcctgtaagccaatgactgtgaagatcgccgatctt 39
Query: 70 cgcaggcggggcggccgtccgcctgcgaagataatttt 107
|||| |||| ||||||||||||||| ||||||||||||
Sbjct: 38 cgcaagcggtgcggccgtccgcctgtgaagataatttt 1
>51073_osa-miRf11858-akr:pmrd
Length = 96
Score = 129 bits (65), Expect = 5e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 9 atcttcgcaggcggggcggctgtccgcctgtaagctaacgactgtgaagatcgccgatct 68
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 24 atcttcgcaggcggggcggccgtccgcctgtaagccaacgactgtgaagatcgccgatct 83
Query: 69 tcgcaggcggggc 81
|||||||||||||
Sbjct: 84 tcgcaggcggggc 96
Score = 99.6 bits (50), Expect = 4e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 45 aacgactgtgaagatcgccgatcttcgcaggcggggcggccgtccgcctg 94
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aacgactgtgaagatcgccgatcttcgcaggcggggcggccgtccgcctg 53
