miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51303_osa-miRf12088-akr:pmrd
Length = 93
Score = 184 bits (93), Expect = 9e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 8 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 60
Query: 68 tggtgtgtgaggctgatatgtgggcccgggtgg 100
|||||||||||||||||||||||||||||||||
Sbjct: 61 tggtgtgtgaggctgatatgtgggcccgggtgg 93
>49966_osa-miRf10751-akr:pmrd
Length = 107
Score = 93.7 bits (47), Expect = 2e-20
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 1 ccaaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgg 60
|||||||||||| || ||||||||||||||| | ||||||||| |||||||| | ||
Sbjct: 1 ccaaataccacccggtcccacatgtcagcctcactctccattcaaacaaaagtgatgcgg 60
Query: 61 gactggatggtgtgtgaggctgatatgtgggcccgggtggcatttgg 107
||| |||| || |||||||||| |||||||||||||||||||||||
Sbjct: 61 gacccgatgctgagtgaggctgacatgtgggcccgggtggcatttgg 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1 ccaaataccacctgggtccacatgtcagcctc 32
|||||| ||||| ||| |||||||||||||||
Sbjct: 107 ccaaatgccacccgggcccacatgtcagcctc 76
>49124_osa-miR1440:pmrd
Length = 189
Score = 77.8 bits (39), Expect = 1e-15
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1 ccaaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgg 60
|||||||||| | ||| ||||||||||||||| || ||||||||| |||||||| ||||
Sbjct: 148 ccaaataccatccgggcccacatgtcagcctcactttccattcaaacaaaagtgatgtgg 89
Query: 61 gactggatggtgtgtgaggctgatatgtgggcccgggtggcatttgg 107
||| || || ||||||||| |||||||||||||||| ||||||
Sbjct: 88 gaccctgtgctggatgaggctgacatgtgggcccgggtggtatttgg 42
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 ccaaataccacctgggtccacatgtcagcctc 32
|||||||||||| ||| |||||||||||||||
Sbjct: 42 ccaaataccacccgggcccacatgtcagcctc 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttgg 107
|||||||||| |||||||||||| ||| ||||||
Sbjct: 115 gtgaggctgacatgtgggcccggatggtatttgg 148
>49318_osa-miRf10103-akr:pmrd
Length = 106
Score = 75.8 bits (38), Expect = 6e-15
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 10 acctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatg 69
||||||||||||||||||||||| || ||||||||| ||||||||||||||| | ||
Sbjct: 9 acctgggtccacatgtcagcctcactttccattcaaacaaaagtgacgtgggatccggtg 68
Query: 70 gtgtgtgaggctgatatgtggg 91
|| |||||||||| |||||||
Sbjct: 69 atgggtgaggctgacatgtggg 90
>49926_osa-miRf10711-akr:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 9e-14
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 18 ccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtga 77
|||||||||||||||||||| |||||||| |||||| || |||||| | || |||||||
Sbjct: 16 ccacatgtcagcctcttttctcattcaaacaaaagtaacatgggaccaggtgatgtgtga 75
Query: 78 ggctgatatgtgggcccgggtggcattt 105
||| || ||| || |||||||||||||
Sbjct: 76 ggccgacgtgtaggtccgggtggcattt 103
>50843_osa-miRf11628-akr:pmrd
Length = 101
Score = 69.9 bits (35), Expect = 4e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 18 ccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtga 77
||||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||
Sbjct: 15 ccacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgatgagtga 74
Query: 78 ggctgatatgtgggcccgggtggcatt 104
|||||| ||||||||| ||||||||||
Sbjct: 75 ggctgacatgtgggcctgggtggcatt 101
>49967_osa-miRf10752-akr:pmrd
Length = 93
Score = 69.9 bits (35), Expect = 4e-13
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 18 ccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtga 77
||||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||
Sbjct: 11 ccacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgctgagtga 70
Query: 78 ggctgatatgtgggcccgggtgg 100
|||||| ||||||||||||||||
Sbjct: 71 ggctgacatgtgggcccgggtgg 93
>49316_osa-miRf10101-akr:pmrd
Length = 99
Score = 65.9 bits (33), Expect = 6e-12
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 8 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 67
||||| ||||| ||||||||||||| | ||||||||| |||||||| | ||||| ||
Sbjct: 4 ccacccgggtctacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccga 63
Query: 68 tggtgtgtgaggctgatatgtgggcccgggtgg 100
|| || |||||||||| ||||||||||| ||||
Sbjct: 64 tgatgagtgaggctgacatgtgggcccgagtgg 96
>49309_osa-miRf10094-akr:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 9e-11
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 1 ccaaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgg 60
|||||| ||||| ||| ||||||||||||||| | ||||||||| |||||||| | ||
Sbjct: 1 ccaaatgccacccgggcccacatgtcagcctcagtctccattcaaacaaaagtgatgcgg 60
Query: 61 gactggatggtgtgtgaggctgatatgtgggcccgggtggcatttgg 107
||| ||| || |||||||||| |||||| |||| ||| |||||||
Sbjct: 61 gacccgataatgagtgaggctgacatgtggacccgagtgccatttgg 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 75 tgaggctgatatgtgggcccgggtggcatttgg 107
||||||||| |||||||||||||||||||||||
Sbjct: 33 tgaggctgacatgtgggcccgggtggcatttgg 1
>49308_osa-miRf10093-akr:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 9e-11
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 1 ccaaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgg 60
|||||| ||||| ||| ||||||||||||||| | ||||||||| |||||||| | ||
Sbjct: 107 ccaaatgccacccgggcccacatgtcagcctcagtctccattcaaacaaaagtgatgcgg 48
Query: 61 gactggatggtgtgtgaggctgatatgtgggcccgggtggcatttgg 107
||| ||| || |||||||||| |||||| |||| ||| |||||||
Sbjct: 47 gacccgataatgagtgaggctgacatgtggacccgagtgccatttgg 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 75 tgaggctgatatgtgggcccgggtggcatttgg 107
||||||||| |||||||||||||||||||||||
Sbjct: 75 tgaggctgacatgtgggcccgggtggcatttgg 107
>51271_osa-miRf12056-akr:pmrd
Length = 115
Score = 60.0 bits (30), Expect = 3e-10
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 1 ccaaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgg 60
|||||| ||||| ||| ||||||||||||||| | ||||||||| |||||||| | ||
Sbjct: 5 ccaaatgccacccgggcccacatgtcagcctcactctccattcaaacaaaagtgatgcgg 64
Query: 61 gactggatggtgtgtgaggctgatatgtgggcccgggtggcatttg 106
||| ||| || || ||||||| ||||||||||| |||| |||||
Sbjct: 65 gacccgataatgagtaaggctgacatgtgggcccgagtggtatttg 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttgg 107
|||||||||| |||||||||||||||||||||||
Sbjct: 38 gtgaggctgacatgtgggcccgggtggcatttgg 5
>51273_osa-miRf12058-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 2 caaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtggg 61
||||| ||||| ||| ||||||||||||||| | ||||||||| |||||||| | |||
Sbjct: 1 caaatgccacccgggcccacatgtcagcctcactctccattcaaacaaaagtgatgcggg 60
Query: 62 actggatggtgtgtgaggctgatatgtgggcccgggtggcatttg 106
|| ||| || || ||||||| ||||||||||| |||| |||||
Sbjct: 61 acccgataatgagtaaggctgacatgtgggcccgagtggtatttg 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttg 106
|||||||||| ||||||||||||||||||||||
Sbjct: 33 gtgaggctgacatgtgggcccgggtggcatttg 1
>51272_osa-miRf12057-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 2 caaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtggg 61
||||| ||||| ||| ||||||||||||||| | ||||||||| |||||||| | |||
Sbjct: 1 caaatgccacccgggcccacatgtcagcctcactctccattcaaacaaaagtgatgcggg 60
Query: 62 actggatggtgtgtgaggctgatatgtgggcccgggtggcatttg 106
|| ||| || || ||||||| ||||||||||| |||| |||||
Sbjct: 61 acccgataatgagtaaggctgacatgtgggcccgagtggtatttg 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttg 106
|||||||||| ||||||||||||||||||||||
Sbjct: 33 gtgaggctgacatgtgggcccgggtggcatttg 1
>50945_osa-miRf11730-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 2 caaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtggg 61
||||| ||||| ||| | ||||||||||||| | ||||||||| |||||||| | |||
Sbjct: 105 caaatgccacccgggcctacatgtcagcctcactctccattcaaacaaaagtgatgcggg 46
Query: 62 actggatggtgtgtgaggctgatatgtgggcccgggtggcatttg 106
|| |||| || |||||||||| ||||||| ||| |||| |||||
Sbjct: 45 acccgatgatgagtgaggctgacatgtgggtccgagtggtatttg 1
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttg 106
|||||||||| |||| |||||||||||||||||
Sbjct: 73 gtgaggctgacatgtaggcccgggtggcatttg 105
>50944_osa-miRf11729-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 2 caaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtggg 61
||||| ||||| ||| | ||||||||||||| | ||||||||| |||||||| | |||
Sbjct: 1 caaatgccacccgggcctacatgtcagcctcactctccattcaaacaaaagtgatgcggg 60
Query: 62 actggatggtgtgtgaggctgatatgtgggcccgggtggcatttg 106
|| |||| || |||||||||| ||||||| ||| |||| |||||
Sbjct: 61 acccgatgatgagtgaggctgacatgtgggtccgagtggtatttg 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttg 106
|||||||||| |||| |||||||||||||||||
Sbjct: 33 gtgaggctgacatgtaggcccgggtggcatttg 1
>49868_osa-miRf10653-akr:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttgg 107
|||||||||| | |||||||||||||||||||||
Sbjct: 73 gtgaggctgacacgtgggcccgggtggcatttgg 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 87/107 (81%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 1 ccaaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgg 60
|||||| ||||| ||| |||| |||||||||| || ||||||||| |||| ||| | ||
Sbjct: 106 ccaaatgccacccgggcccacgtgtcagcctcactttccattcaaacaaaaatgatgcgg 47
Query: 61 gactggatggtgtgtgaggctgatatgtgggcccgggtggcatttgg 107
||| | || || |||||||||| ||||||| || | ||||||||||
Sbjct: 46 gacccggtgctgagtgaggctgacatgtgggtccag-tggcatttgg 1
>50946_osa-miRf11731-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 20 acatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtgagg 79
||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||||
Sbjct: 17 acatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgatgagtgagg 76
Query: 80 ctgatatgtgggcccgggtgg 100
|||| ||||||| ||| ||||
Sbjct: 77 ctgacatgtgggtccgagtgg 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggcatt 104
|||||||||| |||| |||||||||||||||
Sbjct: 31 gtgaggctgacatgtaggcccgggtggcatt 1
>49869_osa-miRf10654-akr:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggcattt 105
|||||||||| | |||||||||||||||||||
Sbjct: 32 gtgaggctgacacgtgggcccgggtggcattt 1
>49855_osa-miRf10640-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttgg 107
||||| |||| |||||||||||| ||||||||||
Sbjct: 73 gtgagactgacatgtgggcccggatggcatttgg 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 1 ccaaataccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgg 60
|||||| ||| | ||| ||||||||||| ||| | ||||||||| ||||||| | ||
Sbjct: 106 ccaaatgccatccgggcccacatgtcagtctcactctccattcaaacgaaagtgatgcgg 47
Query: 61 gactggatggtgtgtgaggctgatatgtgggcccgg 96
||| |||| || |||||||||| ||||||| ||||
Sbjct: 46 gacccgatgctgagtgaggctgacatgtgggtccgg 11
>49857_osa-miRf10642-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttg 106
||||| |||| |||||||||||| |||||||||
Sbjct: 33 gtgagactgacatgtgggcccggatggcatttg 1
>49856_osa-miRf10641-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggcatttg 106
||||| |||| |||||||||||| |||||||||
Sbjct: 33 gtgagactgacatgtgggcccggatggcatttg 1
>49870_osa-miRf10655-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 74 gtgaggctgatatgtgggcccgggtggc 101
|||||||||| | |||||||||||||||
Sbjct: 28 gtgaggctgacacgtgggcccgggtggc 1
