miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51302_osa-miRf12087-akr:pmrd
Length = 107
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 67
Query: 61 tggtgtgtgaggctgatatgtgggcccgggtgg 93
|||||||||||||||||||||||||||||||||
Sbjct: 68 tggtgtgtgaggctgatatgtgggcccgggtgg 100
>49318_osa-miRf10103-akr:pmrd
Length = 106
Score = 75.8 bits (38), Expect = 5e-15
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 3 acctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatg 62
||||||||||||||||||||||| || ||||||||| ||||||||||||||| | ||
Sbjct: 9 acctgggtccacatgtcagcctcactttccattcaaacaaaagtgacgtgggatccggtg 68
Query: 63 gtgtgtgaggctgatatgtggg 84
|| |||||||||| |||||||
Sbjct: 69 atgggtgaggctgacatgtggg 90
>49967_osa-miRf10752-akr:pmrd
Length = 93
Score = 69.9 bits (35), Expect = 3e-13
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 11 ccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtga 70
||||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||
Sbjct: 11 ccacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgctgagtga 70
Query: 71 ggctgatatgtgggcccgggtgg 93
|||||| ||||||||||||||||
Sbjct: 71 ggctgacatgtgggcccgggtgg 93
>49966_osa-miRf10751-akr:pmrd
Length = 107
Score = 69.9 bits (35), Expect = 3e-13
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 11 ccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtga 70
||||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||
Sbjct: 18 ccacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgctgagtga 77
Query: 71 ggctgatatgtgggcccgggtgg 93
|||||| ||||||||||||||||
Sbjct: 78 ggctgacatgtgggcccgggtgg 100
>49316_osa-miRf10101-akr:pmrd
Length = 99
Score = 65.9 bits (33), Expect = 5e-12
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 1 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 60
||||| ||||| ||||||||||||| | ||||||||| |||||||| | ||||| ||
Sbjct: 4 ccacccgggtctacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccga 63
Query: 61 tggtgtgtgaggctgatatgtgggcccgggtgg 93
|| || |||||||||| ||||||||||| ||||
Sbjct: 64 tgatgagtgaggctgacatgtgggcccgagtgg 96
>50843_osa-miRf11628-akr:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 7e-11
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 11 ccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtga 70
||||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||
Sbjct: 15 ccacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgatgagtga 74
Query: 71 ggctgatatgtgggcccgggtgg 93
|||||| ||||||||| ||||||
Sbjct: 75 ggctgacatgtgggcctgggtgg 97
>49926_osa-miRf10711-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 11 ccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtga 70
|||||||||||||||||||| |||||||| |||||| || |||||| | || |||||||
Sbjct: 16 ccacatgtcagcctcttttctcattcaaacaaaagtaacatgggaccaggtgatgtgtga 75
Query: 71 ggc 73
|||
Sbjct: 76 ggc 78
>49124_osa-miR1440:pmrd
Length = 189
Score = 61.9 bits (31), Expect = 7e-11
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 11 ccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtga 70
||||||||||||||| || ||||||||| |||||||| ||||||| || || |||
Sbjct: 131 ccacatgtcagcctcactttccattcaaacaaaagtgatgtgggaccctgtgctggatga 72
Query: 71 ggctgatatgtgggcccgggtgg 93
|||||| ||||||||||||||||
Sbjct: 71 ggctgacatgtgggcccgggtgg 49
>51273_osa-miRf12058-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 1 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 60
||||| ||| ||||||||||||||| | ||||||||| |||||||| | ||||| ||
Sbjct: 7 ccacccgggcccacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccga 66
Query: 61 tggtgtgtgaggctgatatgtgggcccgggtgg 93
| || || ||||||| ||||||||||| ||||
Sbjct: 67 taatgagtaaggctgacatgtgggcccgagtgg 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 67 gtgaggctgatatgtgggcccgggtgg 93
|||||||||| ||||||||||||||||
Sbjct: 33 gtgaggctgacatgtgggcccgggtgg 7
>51272_osa-miRf12057-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 1 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 60
||||| ||| ||||||||||||||| | ||||||||| |||||||| | ||||| ||
Sbjct: 7 ccacccgggcccacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccga 66
Query: 61 tggtgtgtgaggctgatatgtgggcccgggtgg 93
| || || ||||||| ||||||||||| ||||
Sbjct: 67 taatgagtaaggctgacatgtgggcccgagtgg 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 67 gtgaggctgatatgtgggcccgggtgg 93
|||||||||| ||||||||||||||||
Sbjct: 33 gtgaggctgacatgtgggcccgggtgg 7
>51271_osa-miRf12056-akr:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 3e-07
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 1 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 60
||||| ||| ||||||||||||||| | ||||||||| |||||||| | ||||| ||
Sbjct: 12 ccacccgggcccacatgtcagcctcactctccattcaaacaaaagtgatgcgggacccga 71
Query: 61 tggtgtgtgaggctgatatgtgggcccgggtgg 93
| || || ||||||| ||||||||||| ||||
Sbjct: 72 taatgagtaaggctgacatgtgggcccgagtgg 104
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 67 gtgaggctgatatgtgggcccgggtgg 93
|||||||||| ||||||||||||||||
Sbjct: 38 gtgaggctgacatgtgggcccgggtgg 12
>50946_osa-miRf11731-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 13 acatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtgagg 72
||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||||
Sbjct: 17 acatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgatgagtgagg 76
Query: 73 ctgatatgtgggcccgggtgg 93
|||| ||||||| ||| ||||
Sbjct: 77 ctgacatgtgggtccgagtgg 97
>50945_osa-miRf11730-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 13 acatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtgagg 72
||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||||
Sbjct: 87 acatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgatgagtgagg 28
Query: 73 ctgatatgtgggcccgggtgg 93
|||| ||||||| ||| ||||
Sbjct: 27 ctgacatgtgggtccgagtgg 7
>50944_osa-miRf11729-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 13 acatgtcagcctcttttcccattcaaataaaagtgacgtgggactggatggtgtgtgagg 72
||||||||||||| | ||||||||| |||||||| | ||||| |||| || ||||||
Sbjct: 19 acatgtcagcctcactctccattcaaacaaaagtgatgcgggacccgatgatgagtgagg 78
Query: 73 ctgatatgtgggcccgggtgg 93
|||| ||||||| ||| ||||
Sbjct: 79 ctgacatgtgggtccgagtgg 99
>49309_osa-miRf10094-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 1 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 60
||||| ||| ||||||||||||||| | ||||||||| |||||||| | ||||| ||
Sbjct: 8 ccacccgggcccacatgtcagcctcagtctccattcaaacaaaagtgatgcgggacccga 67
Query: 61 tggtgtgtgaggctgatatgtgggcccg 88
| || |||||||||| |||||| ||||
Sbjct: 68 taatgagtgaggctgacatgtggacccg 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 68 tgaggctgatatgtgggcccgggtgg 93
||||||||| ||||||||||||||||
Sbjct: 33 tgaggctgacatgtgggcccgggtgg 8
>49308_osa-miRf10093-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 1 ccacctgggtccacatgtcagcctcttttcccattcaaataaaagtgacgtgggactgga 60
||||| ||| ||||||||||||||| | ||||||||| |||||||| | ||||| ||
Sbjct: 100 ccacccgggcccacatgtcagcctcagtctccattcaaacaaaagtgatgcgggacccga 41
Query: 61 tggtgtgtgaggctgatatgtgggcccg 88
| || |||||||||| |||||| ||||
Sbjct: 40 taatgagtgaggctgacatgtggacccg 13
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 tgaggctgatatgtgggcccgggtgg 93
||||||||| ||||||||||||||||
Sbjct: 75 tgaggctgacatgtgggcccgggtgg 100
