miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50065_osa-miRf10850-akr:pmrd
Length = 142
Score = 85.7 bits (43), Expect = 5e-18
Identities = 68/76 (89%), Gaps = 4/76 (5%)
Strand = Plus / Minus
Query: 25 cgtagcaatctctcacaccgcaacttccatcggtgttcgagagataattcta----cttg 80
|||||||||||||| ||||||||||||||| |||||||||||||||| |||| || |
Sbjct: 86 cgtagcaatctctcgcaccgcaacttccattggtgttcgagagataactctactcgctcg 27
Query: 81 ctggttctcgaaccag 96
||||||||||||||||
Sbjct: 26 ctggttctcgaaccag 11
>49747_osa-miRf10532-akr:pmrd
Length = 118
Score = 71.9 bits (36), Expect = 8e-14
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 3 gctggttctcgaaccagtgaatcgtagcaatctctcacaccgcaacttccatcggtgttc 62
|||||||||||||||||| | | ||||||||||| || |||||||||||| ||| |||
Sbjct: 108 gctggttctcgaaccagtcgacagcagcaatctctcgcatcgcaacttccattggtattc 49
Query: 63 gagagataattctact 78
||||||| ||||||||
Sbjct: 48 gagagatgattctact 33
>51182_osa-miRf11967-akr:pmrd
Length = 136
Score = 67.9 bits (34), Expect = 1e-12
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 56 ggtgttcgagagataattctacttgctggttctcgaaccagt 97
|||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 136 ggtgctcgagagataattctactcgctggttctcgaaccagt 95
Score = 56.0 bits (28), Expect = 5e-09
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 3 gctggttctcgaaccagtgaatcgtagcaatctctcacaccgcaactt 50
|||||||||||||||||| | |||||||||||||| |||||| ||||
Sbjct: 112 gctggttctcgaaccagtataccgtagcaatctctcgcaccgccactt 65
