miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51712_ptc-miR319f:pmrd
Length = 202
Score = 353 bits (178), Expect = 3e-98
Identities = 197/202 (97%), Gaps = 1/202 (0%)
Strand = Plus / Plus
Query: 1 aatggtgggagagagcttccttcagcccactcatggataggagaaagggattgaattagc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 aatggtgggagagagcttccttcagcccactcatggataggagaaaggggttgaattagc 61
Query: 61 tgccgactcattcattcaagcactagtagaaaaaagtggaatggatattcttttgctact 120
||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct: 62 tgccgactcattcattcaagcaccagtagaaaaagg-ggaatggatattcttttgctact 120
Query: 121 gtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggact 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 gtgattgtgtgaatgatgcgggagataattttacatcccctctttttctgtgcttggact 180
Query: 181 gaagggagctccttccttctat 202
||||||||||||||||||||||
Sbjct: 181 gaagggagctccttccttctat 202
>51713_ptc-miR319g:pmrd
Length = 204
Score = 256 bits (129), Expect = 6e-69
Identities = 181/197 (91%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 5 gtgggagagagcttccttcagcccactcatggataggagaaagggattgaattagctgcc 64
||||||||||||||| |||||||||||| ||||||||| |||||| ||||| ||||||||
Sbjct: 6 gtgggagagagcttctttcagcccactcgtggataggacaaaggggttgaactagctgcc 65
Query: 65 gactcattcattcaagcactagtagaaaaaagtg-gaatggatattcttttgctactgtg 123
||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||
Sbjct: 66 gactcattcattcaagcactagtagaaaaaaaggcgaacggtgtttcttttgctactgtg 125
Query: 124 attgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggactgaa 183
|||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||
Sbjct: 126 attgtgtgaatgatgcgggagataattttccatcctctccttttctgtgcttggactgaa 185
Query: 184 gggagctccttccttct 200
|||||||||||||||||
Sbjct: 186 gggagctccttccttct 202
>54846_vvi-miR319f:pmrd
Length = 193
Score = 71.9 bits (36), Expect = 2e-13
Identities = 151/184 (82%), Gaps = 14/184 (7%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
|||||||||||||||| |||||||||||| || | ||| ||| |||||||||||||||
Sbjct: 10 agagagcttccttcagtccactcatggatgggttag-gggtttggattagctgccgactc 68
Query: 70 attcattcaagcactagtagaaaaaagtggaa-tggatattcttttgctactgtgattgt 128
|||||||||| ||| ||||||| ||||| |||| ||| ||||||||| |||
Sbjct: 69 attcattcaaacac-agtagaa-----tggaaatggag-----tttactactgtgaatgt 117
Query: 129 gtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggactgaagggag 188
|||||||||||||||| || ||| ||||| | || ||||||||||||||||||||||
Sbjct: 118 gtgaatgatgcgggaggtaaattt-catccttttcttgtctgtgcttggactgaagggag 176
Query: 189 ctcc 192
||||
Sbjct: 177 ctcc 180
>51710_ptc-miR319d:pmrd
Length = 193
Score = 71.9 bits (36), Expect = 2e-13
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 12 agagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactcat 71
|||||||||||||| ||||||||||| || ||| ||| ||| |||||||||||||||||
Sbjct: 12 agagcttccttcagtccactcatggacgggcgaa-gggtttggattagctgccgactcat 70
Query: 72 tcattcaa 79
||||||||
Sbjct: 71 tcattcaa 78
Score = 54.0 bits (27), Expect = 4e-08
Identities = 67/79 (84%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 114 tgctactgtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgc 173
||||| ||||| ||||||||||| ||||||||| ||| ||||| | || |||||||
Sbjct: 106 tgctattgtgaatgtgtgaatgacgcgggagattaattt-catccttttcttctctgtgc 164
Query: 174 ttggactgaagggagctcc 192
|||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcc 183
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 69.9 bits (35), Expect = 7e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 gagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactcatt 72
||||||||||||| ||||||||||| || ||| ||| ||| ||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaa-gggtttggattagctgccgactcatt 59
Query: 73 cattcaa 79
|||||||
Sbjct: 60 cattcaa 66
Score = 52.0 bits (26), Expect = 2e-07
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 114 tgctactgtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgc 173
||||| ||||| ||||||||||| ||||||||| ||| ||||| | || |||||||
Sbjct: 94 tgctattgtgaatgtgtgaatgacgcgggagattaattt-catccttttcttctctgtgc 152
Query: 174 ttggactgaagggagctc 191
||||||||||||||||||
Sbjct: 153 ttggactgaagggagctc 170
>51709_ptc-miR319c:pmrd
Length = 196
Score = 69.9 bits (35), Expect = 7e-13
Identities = 73/83 (87%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
||||||||| |||||| ||||||||||| || ||| ||| ||| |||||||||||||||
Sbjct: 10 agagagctttcttcagtccactcatggacgggcgaa-gggtttggattagctgccgactc 68
Query: 70 attcattcaagcactagtagaaa 92
|||||||||| ||| ||||||||
Sbjct: 69 attcattcaaacac-agtagaaa 90
Score = 69.9 bits (35), Expect = 7e-13
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 114 tgctactgtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgc 173
||||| ||||| |||||||||||||||||||||| ||| ||||| | || |||||||
Sbjct: 109 tgctattgtgaatgtgtgaatgatgcgggagataaattt-catccttttcttctctgtgc 167
Query: 174 ttggactgaagggagctcc 192
|||||||||||||||||||
Sbjct: 168 ttggactgaagggagctcc 186
>46994_ath-miR319c:pmrd
Length = 199
Score = 69.9 bits (35), Expect = 7e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 121 gtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggact 180
|||| |||||||||||||||||||||| |||| |||| ||||| |||||| |||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
Query: 181 gaagggagctccttc 195
|||||||||||||||
Sbjct: 177 gaagggagctccttc 191
>54844_vvi-miR319c:pmrd
Length = 182
Score = 61.9 bits (31), Expect = 2e-10
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
||||||||| |||||| |||||||||| | | || | ||||||||||||||||||||||
Sbjct: 10 agagagctttcttcagtccactcatgggtggcagta--ggattgaattagctgccgactc 67
Query: 70 attcat 75
||||||
Sbjct: 68 attcat 73
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 168 ctgtgcttggactgaagggagctcc 192
|||||||||||||||||||||||||
Sbjct: 145 ctgtgcttggactgaagggagctcc 169
>54380_pvu-miR319c:pmrd
Length = 734
Score = 61.9 bits (31), Expect = 2e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 158 ccctctttttctgtgcttggactgaagggagctccttccttct 200
|||||||| |||| |||||||||||||||||||||||| ||||
Sbjct: 394 ccctctttctctgagcttggactgaagggagctccttctttct 436
>48574_gma-miR319c:pmrd
Length = 221
Score = 60.0 bits (30), Expect = 7e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 158 ccctctttttctgtgcttggactgaagggagctccttc 195
|||||||| ||||||||||||||||| |||||||||||
Sbjct: 167 ccctctttctctgtgcttggactgaaaggagctccttc 204
>51707_ptc-miR319a:pmrd
Length = 188
Score = 54.0 bits (27), Expect = 4e-08
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 agagagcttccttcagcccactcatggataggagaaagggattgaattagctgccgactc 69
||||||||| |||||| |||||||||| | | || | ||||| ||||||||||||||||
Sbjct: 10 agagagctttcttcagtccactcatgggtggtagta--ggatttaattagctgccgactc 67
Query: 70 attcat 75
||||||
Sbjct: 68 attcat 73
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 168 ctgtgcttggactgaagggagctcc 192
|||| ||||||||||||||||||||
Sbjct: 154 ctgtacttggactgaagggagctcc 178
>48572_gma-miR319a:pmrd
Length = 207
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 49 gattgaattagctgccgactcattcat 75
|||| ||||||||||||||||||||||
Sbjct: 57 gattcaattagctgccgactcattcat 83
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 168 ctgtgcttggactgaagggagctcc 192
|||| ||||||||||||||||||||
Sbjct: 163 ctgtacttggactgaagggagctcc 187
>55050_zma-miR319b:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gaattagctgccgactcattca 74
||||||||||||||||||||||
Sbjct: 62 gaattagctgccgactcattca 83
>54686_tae-miR319a:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggagctcc 192
||||||||||||||||||||||
Sbjct: 174 tgcttggactgaagggagctcc 195
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 47 gggattgaattagctgccgactcattcattcaagcac 83
||||||||| ||||||||||||||||| || |||||
Sbjct: 36 gggattgaacgagctgccgactcattcactcgagcac 72
>54468_sbi-miR319:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gaattagctgccgactcattca 74
||||||||||||||||||||||
Sbjct: 74 gaattagctgccgactcattca 95
>48915_osa-miR319b:pmrd
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gaattagctgccgactcattca 74
||||||||||||||||||||||
Sbjct: 52 gaattagctgccgactcattca 73
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 aattagctgccgactcattcat 75
||||||||||||||||||||||
Sbjct: 63 aattagctgccgactcattcat 84
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 168 ctgtgcttggactgaagggagctcc 192
|||| ||||||||||||||||||||
Sbjct: 164 ctgtacttggactgaagggagctcc 188
>46993_ath-miR319b:pmrd
Length = 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggagctcc 192
||||||||||||||||||||||
Sbjct: 149 tgcttggactgaagggagctcc 170
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcct 193
|||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcct 160
>55054_zma-miR319m:pmrd
Length = 178
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 170 gtgcttggactgaagggagctcct 193
||||||||| ||||||||||||||
Sbjct: 155 gtgcttggattgaagggagctcct 178
>55053_zma-miR319e:pmrd
Length = 173
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 attagctgccgactcattca 74
||||||||||||||||||||
Sbjct: 43 attagctgccgactcattca 62
>55052_zma-miR319d:pmrd
Length = 212
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 attagctgccgactcattca 74
||||||||||||||||||||
Sbjct: 63 attagctgccgactcattca 82
>55051_zma-miR319c:pmrd
Length = 216
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 attagctgccgactcattcattca 78
||||||||||||||||| ||||||
Sbjct: 63 attagctgccgactcatccattca 86
>55049_zma-miR319a:pmrd
Length = 209
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 attagctgccgactcattcattca 78
||||||||||||||||| ||||||
Sbjct: 63 attagctgccgactcatccattca 86
>54936_zma-miR159g:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 170 gtgcttggactgaagggagctcct 193
||||||||| ||||||||||||||
Sbjct: 156 gtgcttggattgaagggagctcct 179
>54935_zma-miR159f:pmrd
Length = 181
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 170 gtgcttggactgaagggagctcct 193
||||||||| ||||||||||||||
Sbjct: 157 gtgcttggattgaagggagctcct 180
>54933_zma-miR159d:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 170 gtgcttggactgaagggagctcct 193
||||||||| ||||||||||||||
Sbjct: 175 gtgcttggattgaagggagctcct 198
>54932_zma-miR159c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 170 gtgcttggactgaagggagctcct 193
||||||||| ||||||||||||||
Sbjct: 175 gtgcttggattgaagggagctcct 198
>54845_vvi-miR319e:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggagctcct 193
||||||||||||||||||||
Sbjct: 77 ttggactgaagggagctcct 96
>54843_vvi-miR319b:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>54643_sof-miR319b:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 170 gtgcttggactgaagggagctcct 193
||||||||| ||||||||||||||
Sbjct: 153 gtgcttggattgaagggagctcct 176
>54630_sof-miR159c:pmrd
Length = 238
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 170 gtgcttggactgaagggagctcct 193
||||||||| ||||||||||||||
Sbjct: 196 gtgcttggattgaagggagctcct 219
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>54469_sbi-miR319b:pmrd
Length = 179
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 attagctgccgactcattcattca 78
||||||||||||||||| ||||||
Sbjct: 43 attagctgccgactcatccattca 66
>54403_sbi-miR159b:pmrd
Length = 253
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 170 gtgcttggactgaagggagctcct 193
||||||||| ||||||||||||||
Sbjct: 211 gtgcttggattgaagggagctcct 234
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggagctcct 193
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51714_ptc-miR319h:pmrd
Length = 195
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggagctcct 193
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>51711_ptc-miR319e:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggagctcct 193
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51390_ppt-miR319e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
>48687_ltu-miR319:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>46884_aqc-miR319:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 cttggactgaagggagctcc 192
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
