miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47024_ath-miR403:pmrd
Length = 135
Score = 268 bits (135), Expect = 1e-72
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1 ttgtcattagaagagtcgtattacatgttttgtgcttgaatctaattcaacaggctttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtcattagaagagtcgtattacatgttttgtgcttgaatctaattcaacaggctttat 60
Query: 61 gtaagagattctttaacaattcctataatctttgttgttggattagattcacgcacaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtaagagattctttaacaattcctataatctttgttgttggattagattcacgcacaaac 120
Query: 121 tcgtaatctgtcttt 135
|||||||||||||||
Sbjct: 121 tcgtaatctgtcttt 135
>48413_bst-miR403:pmrd
Length = 124
Score = 107 bits (54), Expect = 2e-24
Identities = 111/127 (87%), Gaps = 6/127 (4%)
Strand = Plus / Plus
Query: 10 gaagagtcgtattacatgttttgtgcttgaatctaattcaacaggctttatgtaagagat 69
|||||||||||||||||||||||||| |||||||||||| | |||||| ||| | |||||
Sbjct: 1 gaagagtcgtattacatgttttgtgcgtgaatctaattcgaaaggctt-atggaggagat 59
Query: 70 tctttaacaattcctataa-tctttgttgttggattagattcacgcacaaactcgtaatc 128
| |||| ||| |||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 60 tt----acaaatccgataaatttttgctgttggattagattcacgcacaaactcgtaatc 115
Query: 129 tgtcttt 135
|||||||
Sbjct: 116 tgtcttt 122
>54891_vvi-miR403f:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtct 133
|||||||||||||||||||||||||||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>51759_ptc-miR403a:pmrd
Length = 132
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 102 attagattcacgcacaaactcgtaatctgtc 132
|||||||||||||||||||||||||||||||
Sbjct: 102 attagattcacgcacaaactcgtaatctgtc 132
>48424_cpa-miR403:pmrd
Length = 126
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 104 tagattcacgcacaaactcgtaatctgtctt 134
|||||||||||||||||||||||||||||||
Sbjct: 91 tagattcacgcacaaactcgtaatctgtctt 121
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 98 ttggattagattcacgcacaaact 121
||||||||||||| ||||||||||
Sbjct: 41 ttggattagattcgcgcacaaact 18
>54888_vvi-miR403c:pmrd
Length = 115
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtc 132
|||||||||||||||||||||| |||||||
Sbjct: 85 ttagattcacgcacaaactcgtgatctgtc 114
>54669_stu-miR403:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tagattcacgcacaaactcgtaat 127
||||||||||||||||||||||||
Sbjct: 72 tagattcacgcacaaactcgtaat 95
>54889_vvi-miR403d:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>54887_vvi-miR403b:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtct 133
||||||||||||||||||||| ||||||||
Sbjct: 56 ttagattcacgcacaaactcgggatctgtct 86
>54890_vvi-miR403e:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtc 132
||||||||||||||||||||| |||||||
Sbjct: 85 ttagattcacgcacaaactcgcgatctgtc 114
>54886_vvi-miR403a:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgt 124
||||||||||||||||||||||
Sbjct: 85 ttagattcacgcacaaactcgt 106
>51760_ptc-miR403b:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcgtaatctgtc 132
||||||||||||||||||||| |||||||
Sbjct: 71 ttagattcacgcacaaactcgcgatctgtc 100
>51761_ptc-miR403c:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 103 ttagattcacgcacaaactcg 123
|||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactcg 79
>54562_sly-miR403:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 104 tagattcacgcacaaactcgtaat 127
||||||||||||||| ||||||||
Sbjct: 88 tagattcacgcacaagctcgtaat 111
