miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53388_ptc-miRf11566-akr:pmrd
Length = 99
Score = 69.9 bits (35), Expect = 3e-13
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 1 tgagcattttcagttcggtccggttttggaccaaaataaacaaccaaaccg 51
||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct: 98 tgagcatttccggttcggtccggttttaaaccaaaataaacaaccaaaccg 48
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 70 gaaccgaaccgaaccgaaaaccgg 93
||||||||||||||||||||||||
Sbjct: 29 gaaccgaaccgaaccgaaaaccgg 6
>54036_ptc-miRf12214-akr:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2 gagcattttcagttcggtccggttttggaccaaaataaacaaccaaaccg 51
|||||||| | ||||||||||||||| ||||||||||||||||| ||||
Sbjct: 97 gagcatttccggttcggtccggttttaaaccaaaataaacaaccagaccg 48
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 70 gaaccgaaccgaaccgaaaaccgg 93
||||||||||||||||||||||||
Sbjct: 24 gaaccgaaccgaaccgaaaaccgg 1
>53555_ptc-miRf11733-akr:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2 gagcattttcagttcggtccggttttggaccaaaataaacaaccaaaccg 51
|||||||| | ||||||||||||||| ||||||||||||||||| ||||
Sbjct: 97 gagcatttccggttcggtccggttttaaaccaaaataaacaaccagaccg 48
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 70 gaaccgaaccgaaccgaaaaccgg 93
||||||||||||||||||||||||
Sbjct: 24 gaaccgaaccgaaccgaaaaccgg 1
>54306_ptc-miRf12484-akr:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 70 gaaccgaaccgaaccgaaaaccggttca 97
||||||||||||||||||||||||||||
Sbjct: 29 gaaccgaaccgaaccgaaaaccggttca 2
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 13 gttcggtccggttttggaccaaaataaacaaccaaaccg 51
||||||||| ||||| ||||||||||||||||||||||
Sbjct: 87 gttcggtccagttttaaaccaaaataaacaaccaaaccg 49
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 70 gaaccgaaccgaaccgaaaaccggttca 97
||||||||||||||||||||||||||||
Sbjct: 67 gaaccgaaccgaaccgaaaaccggttca 40
>53686_ptc-miRf11864-akr:pmrd
Length = 69
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 70 gaaccgaaccgaaccgaaaaccggttca 97
|||||||| |||||||||||||||||||
Sbjct: 63 gaaccgaatcgaaccgaaaaccggttca 36
