miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51843_ptc-miRf10021-akr:pmrd
Length = 113
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 tgggtttggcatctatattagactcaatacagttggacttggcaatgcaccaagtccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tgggtttggcatctatattagactcaatacagttggacttggcaatgcaccaagtccaag 70
Query: 61 gttgcgtgggtctgacacgcatgccagaccca 92
||||||||||||||||||||||||||||||||
Sbjct: 71 gttgcgtgggtctgacacgcatgccagaccca 102
>51842_ptc-miRf10020-akr:pmrd
Length = 105
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 tgggtttggcatctatattagactcaatacagttggacttggcaatgcaccaagtccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgggtttggcatctatattagactcaatacagttggacttggcaatgcaccaagtccaag 66
Query: 61 gttgcgtgggtctgacacgcatgccagaccca 92
||||||||||||||||||||||||||||||||
Sbjct: 67 gttgcgtgggtctgacacgcatgccagaccca 98
>52065_ptc-miRf10243-akr:pmrd
Length = 191
Score = 81.8 bits (41), Expect = 8e-17
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 33 ttggacttggcaatgcaccaagtccaaggttgcgtgggtctgacacgcatgccagac 89
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct: 180 ttggacttggcagtgcaccaagtccaaggtagcgtgggtctggcacgcatgctagac 124
>53886_ptc-miRf12064-akr:pmrd
Length = 111
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 50 ccaagtccaaggttgcgtgggtctgacacgcatgccagaccca 92
||||||||||||| | |||||||||||| |||||||| |||||
Sbjct: 60 ccaagtccaaggtggtgtgggtctgacatgcatgccaaaccca 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 gcgtgggtctgacacgcatgccag 87
||||||||||| ||||||||||||
Sbjct: 8 gcgtgggtctggcacgcatgccag 31
>52702_ptc-miRf10880-akr:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 33 ttggacttggcaatgcaccaagtccaaggttgcgtgggtctgacacgcatgccagaccca 92
|||||||| ||| ||| ||| ||||||||| | | |||||| |||||||||||||||||
Sbjct: 40 ttggacttagcagtgcgccaggtccaaggtgacataggtctggcacgcatgccagaccca 99
>51955_ptc-miRf10133-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 65 cgtgggtctgacacgcatgccagaccca 92
||||||||| ||||||||||||||||||
Sbjct: 28 cgtgggtctaacacgcatgccagaccca 1
>52730_ptc-miRf10908-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 33 ttggacttggcaatgcaccaagtccaaggttgcgtgggtctgacacgcatgccagaccca 92
|||||||| ||| | ||||||||| ||| | ||||||| ||||||||||| |||||||
Sbjct: 60 ttggacttagcagtacaccaagtctaagataacgtgggtttgacacgcatgttagaccca 1
