miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51830_ptc-miRf10008-akr:pmrd
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 5 ccggcctggtgggttgacccgagactcggtggctggaccggttcgagtttattaaaagat 64
|||||||||||||| |||||| ||| ||||||||||||||| || ||||| |||||||
Sbjct: 21 ccggcctggtgggtcgacccgggacctggtggctggaccggtccgggtttaataaaagac 80
Query: 65 cggc 68
||||
Sbjct: 81 cggc 84
>53952_ptc-miRf12130-akr:pmrd
Length = 77
Score = 60.0 bits (30), Expect = 4e-10
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 5 ccggcctggtgggttgacccgagactcggtggctggaccggttcgagtttattaaaag 62
|||||| || |||| |||||| ||| ||||||||||||||||||| ||||| ||||||
Sbjct: 58 ccggcccggcgggtcgacccgggacccggtggctggaccggttcgggtttaataaaag 1
>53405_ptc-miRf11583-akr:pmrd
Length = 77
Score = 58.0 bits (29), Expect = 1e-09
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 1 tggaccggcctggtgggttgacccgagactcggtggctggaccggttcgagtttattaaa 60
|||||||||| || |||| |||||| ||| |||||||||||||||| || ||||| ||||
Sbjct: 65 tggaccggcccggcgggtcgacccgggacccggtggctggaccggtccgggtttactaaa 6
Query: 61 a 61
|
Sbjct: 5 a 5
>52059_ptc-miRf10237-akr:pmrd
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggccggtgcaacgacccgacaaaac 90
||||||||||||| || || |||| | |||||| | |||||||||||| | || | ||||
Sbjct: 19 cggtggctggaccagtccgggtttgtcaaaagaccagccggtgcaacggcacggccaaac 78
Query: 91 ccggtcgaccc 101
|||||||||||
Sbjct: 79 ccggtcgaccc 89
>52823_ptc-miRf11001-akr:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggccggtgcaacgacccgacaaaac 90
|||||||||||||||| | ||||||||||||| |||| || ||||| |||| ||||
Sbjct: 102 cggtggctggaccggtctgggtttattaaaagaccggctggggcaacagcccggtcaaac 43
Query: 91 ccggtcgaccccccgggtcgaccca 115
|||| ||||| ||||||||||||
Sbjct: 42 ccgggcgacctggcgggtcgaccca 18
>54338_ptc-miRf12516-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 33 gtggctggaccggttcgagtttattaaaagatcggc 68
||||||||||||||||| |||| |||||||| ||||
Sbjct: 61 gtggctggaccggttcgggtttgttaaaagaccggc 96
>54004_ptc-miRf12182-akr:pmrd
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 35 ggctggaccggttcgagtttattaaaagatcggccggtgcaacgacccgacaaaacccgg 94
||||||||||||||| |||| | |||||| ||| | |||||||||||| |||||| |
Sbjct: 91 ggctggaccggttcgggtttgtcaaaagaccggtcaatgcaacgacccggtcaaacccag 32
Query: 95 tcgaccccccgggtcgaccc 114
||||||| |||||| ||||
Sbjct: 31 tcgacccggcgggtcaaccc 12
>52252_ptc-miRf10430-akr:pmrd
Length = 113
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 58 aaaagatcggccggtgcaacgacccgacaaaacccggtcgaccc 101
|||||| ||| ||| ||||||||||||| ||||| |||||||||
Sbjct: 61 aaaagaccggtcggggcaacgacccgaccaaacctggtcgaccc 18
>52284_ptc-miRf10462-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggccggtgcaac 77
|||||||||||||||| | ||||| |||||||||||| || |||||
Sbjct: 95 cggtggctggaccggtctgggtttaataaaagatcggctggggcaac 49
>54259_ptc-miRf12437-akr:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggc 68
|||||||||||||||| || ||||| ||||||| ||||
Sbjct: 38 cggtggctggaccggtccgggtttaataaaagaccggc 1
>54046_ptc-miRf12224-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggc 68
|||||||||||||||| || ||||| ||||||| ||||
Sbjct: 38 cggtggctggaccggtccgggtttaataaaagaccggc 1
>54015_ptc-miRf12193-akr:pmrd
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 20 gacccgagactcggtggctggaccggttcgagtttattaaaa 61
|||||| ||| |||||||||||||||| || ||||| |||||
Sbjct: 46 gacccgggacccggtggctggaccggtccgggtttaataaaa 5
>53848_ptc-miRf12026-akr:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 34 tggctggaccggttcgagtttattaaaaga 63
||||||||||||| ||||||| ||||||||
Sbjct: 31 tggctggaccggtccgagtttgttaaaaga 2
>53648_ptc-miRf11826-akr:pmrd
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggc 68
|||||||||||||||| || ||||| ||||||| ||||
Sbjct: 41 cggtggctggaccggtccgggtttaataaaagaccggc 78
>53498_ptc-miRf11676-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggc 68
|||||||||||||||| || ||||| ||||||| ||||
Sbjct: 38 cggtggctggaccggtccgggtttaataaaagaccggc 1
>52916_ptc-miRf11094-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggc 68
|||||||||||||||| || ||||| ||||||| ||||
Sbjct: 38 cggtggctggaccggtccgggtttaataaaagaccggc 1
>52796_ptc-miRf10974-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggc 68
|||||||||||||||| || ||||| ||||||| ||||
Sbjct: 39 cggtggctggaccggtccgggtttaataaaagaccggc 2
>52345_ptc-miRf10523-akr:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggccggtgcaacgac 80
|||| ||||||||| |||| |||| |||||| ||||||||||||||||
Sbjct: 99 cggtagctggaccgattcgggtttgccaaaagaccggccggtgcaacgac 50
>52253_ptc-miRf10431-akr:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 31 cggtggctggaccggttcgagtttattaaaagatcggc 68
|||||||||||||||| || ||||| ||||||| ||||
Sbjct: 51 cggtggctggaccggtccgggtttaataaaagaccggc 88
>54357_ptc-miRf12535-akr:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaaga 63
|||||||||||||||| || ||||| |||||||
Sbjct: 35 cggtggctggaccggtccgggtttaataaaaga 3
>54318_ptc-miRf12496-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaaga 63
|||||||||||||||| || ||||| |||||||
Sbjct: 35 cggtggctggaccggtccgggtttactaaaaga 3
>53956_ptc-miRf12134-akr:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaaga 63
|||||||||||||||| || ||||| |||||||
Sbjct: 35 cggtggctggaccggtccgggtttaataaaaga 3
>53858_ptc-miRf12036-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaaga 63
|||||||||||||||| || ||||| |||||||
Sbjct: 36 cggtggctggaccggtccgggtttaataaaaga 4
>53618_ptc-miRf11796-akr:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 31 cggtggctggaccggttcgagtttattaaaaga 63
|||||||||||||||| || ||||| |||||||
Sbjct: 44 cggtggctggaccggtccgggtttaataaaaga 76
>53352_ptc-miRf11530-akr:pmrd
Length = 75
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaaga 63
|||||||||||||||| || ||||| |||||||
Sbjct: 35 cggtggctggaccggtccgggtttaataaaaga 3
>53249_ptc-miRf11427-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaaga 63
|||||||||||||||| || ||||| |||||||
Sbjct: 35 cggtggctggaccggtccgggtttaataaaaga 3
>52827_ptc-miRf11005-akr:pmrd
Length = 74
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaaga 63
|||||||||||||||| || ||||| |||||||
Sbjct: 35 cggtggctggaccggtccgggtttaataaaaga 3
>52394_ptc-miRf10572-akr:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 9e-05
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 27 gactcggtggctggaccggttcgagtttattaaaagatcggccggtgcaacgacccgaca 86
|||| ||||||| ||||||| | |||| |||||||| ||| | |||||| || || ||
Sbjct: 20 gactaggtggctagaccggtcctggtttgttaaaagaccggttgatgcaacaacgcggca 79
Query: 87 aaacccggtcgaccccccgggtcgaccca 115
||||| |||||| || ||||||||||||
Sbjct: 80 aaacctggtcgatccggcgggtcgaccca 108
>52133_ptc-miRf10311-akr:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 72 tgcaacgacccgacaaaacccggtcgacc 100
||||| |||||| ||||||||||||||||
Sbjct: 80 tgcaatgacccggcaaaacccggtcgacc 108
>52132_ptc-miRf10310-akr:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 72 tgcaacgacccgacaaaacccggtcgacc 100
||||| |||||| ||||||||||||||||
Sbjct: 80 tgcaatgacccggcaaaacccggtcgacc 108
>53680_ptc-miRf11858-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 87 aaacccggtcgaccccccgggtcgaccc 114
||||||||||||||| |||||||||||
Sbjct: 31 aaacccggtcgacccagcgggtcgaccc 4
>53332_ptc-miRf11510-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 31 cggtggctggaccggttcgagtttattaaaag 62
|||||||||||||||| || ||||| ||||||
Sbjct: 32 cggtggctggaccggtccgggtttaataaaag 1
>52979_ptc-miRf11157-akr:pmrd
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 31 cggtggctggaccggttcgagtttattaaaag 62
|||||||||||||||| || ||||| ||||||
Sbjct: 41 cggtggctggaccggtccgggtttaataaaag 72
>52971_ptc-miRf11149-akr:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 31 cggtggctggaccggttcgagtttattaaaag 62
|||||||||||||||| || ||||| ||||||
Sbjct: 37 cggtggctggaccggtccgggtttaataaaag 68
>52383_ptc-miRf10561-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 31 cggtggctggaccggttcgagtttattaaaag 62
|||||||||||||||| || ||||| ||||||
Sbjct: 53 cggtggctggaccggtccgggtttaataaaag 84
