miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53654_ptc-miRf11832-akr:pmrd
Length = 123
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaacgaaacggtcggtttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaacgaaacggtcggtttga 22
Query: 61 accggtttcggttcggttt 79
|||||||||||||||||||
Sbjct: 21 accggtttcggttcggttt 3
>51868_ptc-miRf10046-akr:pmrd
Length = 97
Score = 79.8 bits (40), Expect = 3e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaac 44
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17 aaaccgagccaaacctgtttgaaccggtttttgtcctaaaaaac 60
>53948_ptc-miRf12126-akr:pmrd
Length = 158
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaacgaaac 49
||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 89 aaaccgagccaaaccggtttgaaccggtttttgtcttaaaaaactaaac 137
>52446_ptc-miRf10624-akr:pmrd
Length = 158
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaacgaaac 49
||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 89 aaaccgagccaaaccggtttgaaccggtttttgtcttaaaaaactaaac 137
>52886_ptc-miRf11064-akr:pmrd
Length = 144
Score = 71.9 bits (36), Expect = 6e-14
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaac 44
||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 75 aaaccaagccaaaccagcttgaaccggtttttgtcctaaaaaac 32
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 69.9 bits (35), Expect = 2e-13
Identities = 72/82 (87%), Gaps = 8/82 (9%)
Strand = Plus / Minus
Query: 5 cgagccaaaccagtttgaaccggtttttgtcctaaaaaac------gaaacg-gtcggtt 57
|||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||
Sbjct: 85 cgagccaaaccagtttgaactggttttt-tcctaaaaaactgaaccgaaactagtcggtt 27
Query: 58 tgaaccggtttcggttcggttt 79
||||||||||||||||||||||
Sbjct: 26 tgaaccggtttcggttcggttt 5
>52857_ptc-miRf11035-akr:pmrd
Length = 66
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcct 37
||||||||||||||| |||||||||||||||||||||
Sbjct: 39 aaaccgagccaaaccggtttgaaccggtttttgtcct 3
>52625_ptc-miRf10803-akr:pmrd
Length = 108
Score = 65.9 bits (33), Expect = 4e-12
Identities = 76/91 (83%), Gaps = 12/91 (13%)
Strand = Plus / Plus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaa-----------cgaaa- 48
||||||||||||||| |||||||| ||||||| |||||||||| |||||
Sbjct: 11 aaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccgaaac 70
Query: 49 cggtcggtttgaaccggtttcggttcggttt 79
|||||||||||||||||||||||||||||||
Sbjct: 71 cggtcggtttgaaccggtttcggttcggttt 101
>53823_ptc-miRf12001-akr:pmrd
Length = 124
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaac 44
||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct: 103 aaaccgagccaaaccggtttgaatcggtttttgccctaaaaaac 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 51 gtcggtttgaaccggtttcggttcggttt 79
|||||||||| ||||||||||||||||||
Sbjct: 36 gtcggtttgacccggtttcggttcggttt 8
>52274_ptc-miRf10452-akr:pmrd
Length = 147
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaac 44
|||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 52 aaaccgagccaaacaggtttgaacctgtttttgtcctaaaaaac 95
>53431_ptc-miRf11609-akr:pmrd
Length = 60
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtc 35
||||||||||||||| |||||||||||||||||||
Sbjct: 35 aaaccgagccaaaccggtttgaaccggtttttgtc 1
>52373_ptc-miRf10551-akr:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 6e-11
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 2 aaccgagccaaaccagtttgaaccggtttttgtcctaaaaaac 44
|||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 108 aaccgagccaaaccggtttgaaccggtttttaccctaaaaaac 66
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 aaaccgagccaaaccagtttgaaccggtt 29
||||||||||||||| |||||| ||||||
Sbjct: 29 aaaccgagccaaaccggtttgacccggtt 1
>54327_ptc-miRf12505-akr:pmrd
Length = 143
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 11 aaaccagtttgaaccggtttttgtcctaaaaaac 44
||||| ||||||||||||||||||||||||||||
Sbjct: 8 aaaccggtttgaaccggtttttgtcctaaaaaac 41
>53731_ptc-miRf11909-akr:pmrd
Length = 74
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 50 ggtcggtttgaaccggtttcggttcggttt 79
||||||||||||||||||||||||||||||
Sbjct: 31 ggtcggtttgaaccggtttcggttcggttt 60
>53395_ptc-miRf11573-akr:pmrd
Length = 74
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 50 ggtcggtttgaaccggtttcggttcggttt 79
||||||||||||||||||||||||||||||
Sbjct: 31 ggtcggtttgaaccggtttcggttcggttt 60
>53947_ptc-miRf12125-akr:pmrd
Length = 75
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 gtcggtttgaaccggtttcggttcggttt 79
|||||||||||||||||||||||||||||
Sbjct: 32 gtcggtttgaaccggtttcggttcggttt 60
>52930_ptc-miRf11108-akr:pmrd
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 44 cgaaacggtcggtttgaaccggtttcggttcggttt 79
|||||| || ||||||||||||||||||||||||||
Sbjct: 35 cgaaactgttggtttgaaccggtttcggttcggttt 70
>51831_ptc-miRf10009-akr:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 4e-09
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaac 44
||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 7 aaaccgagccaaaccggtttgaacctg-ttttgtcctaaaaaac 49
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 49 cggtcggtttgaaccggtttcggttcggttt 79
|||| ||||||||||||||||||||||||||
Sbjct: 66 cggttggtttgaaccggtttcggttcggttt 96
>53928_ptc-miRf12106-akr:pmrd
Length = 137
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttg 33
|||||||| |||||| |||||||||||||||||
Sbjct: 69 aaaccgagtcaaaccggtttgaaccggtttttg 37
>54220_ptc-miRf12398-akr:pmrd
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 ggtcggtttgaaccggtttcggttcgg 76
||||||||||| |||||||||||||||
Sbjct: 28 ggtcggtttgacccggtttcggttcgg 54
>52338_ptc-miRf10516-akr:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 cggtcggtttgaaccggtttcg 70
||||||||||||||||||||||
Sbjct: 107 cggtcggtttgaaccggtttcg 128
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15 cagtttgaaccggtttttg 33
|||||||||||||||||||
Sbjct: 19 cagtttgaaccggtttttg 37
>53432_ptc-miRf11610-akr:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 cggtcggtttgaaccggtttcggtt 73
||||||||||||||| |||||||||
Sbjct: 57 cggtcggtttgaaccagtttcggtt 81
>53113_ptc-miRf11291-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 20 tgaaccggtttttgtcctaaaaaac 44
|||||||||||| ||||||||||||
Sbjct: 57 tgaaccggttttggtcctaaaaaac 33
>51988_ptc-miRf10166-akr:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 6e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaacgaaac 49
||||| || |||||| |||||||||||||| || ||||||||| ||||
Sbjct: 85 aaaccaagtcaaaccggtttgaaccggtttctgctctaaaaaaccaaac 133
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 52 tcggtttgaaccgg-tttcggttcggtt 78
|||||||||||||| |||||||||||||
Sbjct: 34 tcggtttgaaccggttttcggttcggtt 61
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61 accggtttcggttcggttt 79
|||||||||||||||||||
Sbjct: 12 accggtttcggttcggttt 30
>52182_ptc-miRf10360-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 54 ggtttgaaccggtttcggttcgg 76
||||||| |||||||||||||||
Sbjct: 106 ggtttgacccggtttcggttcgg 84
