miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54221_ptc-miRf12399-akr:pmrd
Length = 127
Score = 99.6 bits (50), Expect = 4e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 37 attaccgacgaatttactgacggaaaagacacgtcggtaataatatttttattaccaacg 96
|||||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 2 attaccgacggatttactgacggaacagacgcgtcggtaataatttttttattaccaacg 61
Query: 97 gatttaccga 106
|| |||||||
Sbjct: 62 gaattaccga 71
>53318_ptc-miRf11496-akr:pmrd
Length = 119
Score = 93.7 bits (47), Expect = 3e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 37 attaccgacgaatttactgacggaaaagacacgtcggtaataatatttttattaccaacg 96
|||||||||| |||||||||||||| | || ||||||||||||| |||||||||||||||
Sbjct: 4 attaccgacggatttactgacggaacatacgcgtcggtaataatttttttattaccaacg 63
Query: 97 gatttaccgac 107
|| ||||||||
Sbjct: 64 gaattaccgac 74
>54170_ptc-miRf12348-akr:pmrd
Length = 126
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 37 attaccgacgaatttactgacggaaaagacacgtcggtaataatatttttattaccaacg 96
|||||||||| |||||||||||||| | || ||||||||||||| |||||||||||||||
Sbjct: 2 attaccgacggatttactgacggaacaaacgcgtcggtaataat-tttttattaccaacg 60
Query: 97 gatttaccga 106
|| |||||||
Sbjct: 61 gaattaccga 70
>54117_ptc-miRf12295-akr:pmrd
Length = 93
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 37 attaccgacgaatttactgacggaaaagacacgtcggtaataatatttttattaccaa 94
|||||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct: 3 attaccgacggatttactgacggaacagacgcgtcggtaataatttttttattaccaa 60
>52757_ptc-miRf10935-akr:pmrd
Length = 104
Score = 77.8 bits (39), Expect = 2e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 36 tattaccgacgaatttactgacggaaaagacacgtcggtaataatattttt 86
||||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct: 8 tattaccgacggatttactgacggaaatgacgcgtcggtaataatattttt 58
>53628_ptc-miRf11806-akr:pmrd
Length = 146
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 82 tttttattaccaacggatttaccgacgg 109
||||||||||||||||||||||||||||
Sbjct: 97 tttttattaccaacggatttaccgacgg 70
>52697_ptc-miRf10875-akr:pmrd
Length = 69
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 82 tttttattaccaacggatttaccgacgg 109
||||||||||||||||||||||||||||
Sbjct: 33 tttttattaccaacggatttaccgacgg 6
>53968_ptc-miRf12146-akr:pmrd
Length = 145
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 80 tatttttattaccaacggatttaccgacgg 109
||||||| ||||||||||||||||||||||
Sbjct: 51 tattttttttaccaacggatttaccgacgg 22
>53128_ptc-miRf11306-akr:pmrd
Length = 145
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 80 tatttttattaccaacggatttaccgacgg 109
||||||| ||||||||||||||||||||||
Sbjct: 95 tattttttttaccaacggatttaccgacgg 124
>52631_ptc-miRf10809-akr:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 82 tttttattaccaacggatttaccgac 107
||||||||||||||||||||||||||
Sbjct: 30 tttttattaccaacggatttaccgac 5
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/39 (92%), Gaps = 2/39 (5%)
Strand = Plus / Plus
Query: 70 tcggtaataatatttt--tattaccaacggatttaccga 106
|||||||||||||||| ||||||| |||||||||||||
Sbjct: 67 tcggtaataatatttttttattaccgacggatttaccga 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ttctgtcggtaaatccgtttgtaat 25
||||||||||||||||||| |||||
Sbjct: 1 ttctgtcggtaaatccgttggtaat 25
>54164_ptc-miRf12342-akr:pmrd
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 86 tattaccaacggatttaccgacgg 109
||||||||||||||||||||||||
Sbjct: 32 tattaccaacggatttaccgacgg 9
>53338_ptc-miRf11516-akr:pmrd
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 86 tattaccaacggatttaccgacgg 109
||||||||||||||||||||||||
Sbjct: 31 tattaccaacggatttaccgacgg 8
>53290_ptc-miRf11468-akr:pmrd
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 86 tattaccaacggatttaccgacgg 109
||||||||||||||||||||||||
Sbjct: 32 tattaccaacggatttaccgacgg 9
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 attaccgacgaatttactgacggaa 61
|||||||||| ||||||||||||||
Sbjct: 35 attaccgacggatttactgacggaa 59
>52825_ptc-miRf11003-akr:pmrd
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 86 tattaccaacggatttaccgacgg 109
||||||||||||||||||||||||
Sbjct: 31 tattaccaacggatttaccgacgg 8
>52511_ptc-miRf10689-akr:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 82 tttttattaccaacggatttaccgacgg 109
|||||||||||||||||||||| |||||
Sbjct: 30 tttttattaccaacggatttactgacgg 3
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/39 (92%), Gaps = 2/39 (5%)
Strand = Plus / Plus
Query: 70 tcggtaataatatttt--tattaccaacggatttaccga 106
|||||||||||||||| ||||||| |||||||||||||
Sbjct: 67 tcggtaataatatttttttattaccgacggatttaccga 105
>51983_ptc-miRf10161-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 86 tattaccaacggatttaccgacgg 109
||||||||||||||||||||||||
Sbjct: 94 tattaccaacggatttaccgacgg 71
>54290_ptc-miRf12468-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 74 ttaccaacggatttaccgacgg 53
>54140_ptc-miRf12318-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 74 ttaccaacggatttaccgacgg 53
>53780_ptc-miRf11958-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 74 ttaccaacggatttaccgacgg 53
>53767_ptc-miRf11945-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 tattaccgacgaatttactgacggaa 61
||||||||||| ||||||||||||||
Sbjct: 11 tattaccgacggatttactgacggaa 36
>53755_ptc-miRf11933-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 62 ttaccaacggatttaccgacgg 41
>53754_ptc-miRf11932-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 62 ttaccaacggatttaccgacgg 41
>53495_ptc-miRf11673-akr:pmrd
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 61 ttaccaacggatttaccgacgg 40
>53269_ptc-miRf11447-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 75 ttaccaacggatttaccgacgg 54
>53151_ptc-miRf11329-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 75 ttaccaacggatttaccgacgg 54
>52634_ptc-miRf10812-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 74 ttaccaacggatttaccgacgg 53
>52549_ptc-miRf10727-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 74 ttaccaacggatttaccgacgg 53
>52333_ptc-miRf10511-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 74 ttaccaacggatttaccgacgg 53
>52246_ptc-miRf10424-akr:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 84 ttaccaacggatttaccgacgg 63
>51929_ptc-miRf10107-akr:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttaccaacggatttaccgacgg 109
||||||||||||||||||||||
Sbjct: 84 ttaccaacggatttaccgacgg 63
>54260_ptc-miRf12438-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>54249_ptc-miRf12427-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>54168_ptc-miRf12346-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacgg 118
>54012_ptc-miRf12190-akr:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 139 taccaacggatttaccgacgg 119
>53917_ptc-miRf12095-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>53822_ptc-miRf12000-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>53779_ptc-miRf11957-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacgg 118
>53778_ptc-miRf11956-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>53769_ptc-miRf11947-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 attaccgacgaatttactgacggaa 61
||||||||||||||||| |||||||
Sbjct: 20 attaccgacgaatttaccgacggaa 44
>53659_ptc-miRf11837-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacgg 118
>53571_ptc-miRf11749-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>53529_ptc-miRf11707-akr:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 139 taccaacggatttaccgacgg 119
>53512_ptc-miRf11690-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacgg 118
>53370_ptc-miRf11548-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacgg 118
>53365_ptc-miRf11543-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>53329_ptc-miRf11507-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>53328_ptc-miRf11506-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacgg 118
>53230_ptc-miRf11408-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacgg 118
>53161_ptc-miRf11339-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 95 taccaacggatttaccgacgg 75
>53160_ptc-miRf11338-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacgg 118
>53133_ptc-miRf11311-akr:pmrd
Length = 145
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 137 taccaacggatttaccgacgg 117
>52597_ptc-miRf10775-akr:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 175 taccaacggatttaccgacgg 155
>52416_ptc-miRf10594-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>52142_ptc-miRf10320-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>52139_ptc-miRf10317-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacgg 109
|||||||||||||||||||||
Sbjct: 98 taccaacggatttaccgacgg 78
>54167_ptc-miRf12345-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 38 ttaccgacgaatttactgacggaa 61
||||| ||||||||||||||||||
Sbjct: 75 ttaccaacgaatttactgacggaa 52
>53361_ptc-miRf11539-akr:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 taccaacggatttaccgacg 108
||||||||||||||||||||
Sbjct: 138 taccaacggatttaccgacg 119
>52785_ptc-miRf10963-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 82 tttttattaccaacggatttaccgacgg 109
||||||||||||||||| |||| |||||
Sbjct: 3 tttttattaccaacggaattactgacgg 30
