miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52238_ptc-miRf10416-akr:pmrd
Length = 122
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 24 gggctggaaccgggctaggttgatgaaaaaactcagccagggatttggcccggcaaaacc 83
|||||||||||| | ||||||||||||||| | | ||||||||||| |||| ||||||
Sbjct: 37 gggctggaaccgagtcgggttgatgaaaaaac-cggtcagggatttggtccggtaaaacc 95
Query: 84 cggtcga 90
|||||||
Sbjct: 96 cggtcga 102
>52419_ptc-miRf10597-akr:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 50 aaaaactcagccagggatttggcccggcaaaacccggtcgac 91
||||| ||||| |||||||||||| ||||||||||||||||
Sbjct: 47 aaaaaatcagcttgggatttggcccagcaaaacccggtcgac 88
>53781_ptc-miRf11959-akr:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 63 gggatttggcccggcaaaacccggtcgacctgg 95
|||| ||||||||| |||||||||||||||||
Sbjct: 53 gggagttggcccggagaaacccggtcgacctgg 21
>53762_ptc-miRf11940-akr:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 68 ttggcccggcaaaacccggtcgacc 92
|||||||||| ||||||||||||||
Sbjct: 42 ttggcccggcgaaacccggtcgacc 18
>52133_ptc-miRf10311-akr:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 cccggcaaaacccggtcgacc 92
|||||||||||||||||||||
Sbjct: 88 cccggcaaaacccggtcgacc 108
>52132_ptc-miRf10310-akr:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 cccggcaaaacccggtcgacc 92
|||||||||||||||||||||
Sbjct: 88 cccggcaaaacccggtcgacc 108
>52477_ptc-miRf10655-akr:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 23 agggctggaaccgggctaggttgatgaaaaaa 54
||||||||||||||||| | ||||| ||||||
Sbjct: 43 agggctggaaccgggctggcttgataaaaaaa 74
