miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53123_ptc-miRf11301-akr:pmrd
Length = 153
Score = 75.8 bits (38), Expect = 9e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 84 atattgagctgattgaaaagtacaattacaagtgagactaaatcatgtggggaaaacatt 143
||||||||||| |||| || ||||||||||||| || |||||||||||||||||| | |
Sbjct: 81 atattgagctggttgagaattacaattacaagtaaggctaaatcatgtggggaaagtact 140
Query: 144 gtagctttcc 153
||||||||||
Sbjct: 141 gtagctttcc 150
>53055_ptc-miRf11233-akr:pmrd
Length = 84
Score = 75.8 bits (38), Expect = 9e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 119 gactaaatcatgtggggaaaacattgtagctttccaca 156
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gactaaatcatgtggggaaaacattgtagctttccaca 38
>52756_ptc-miRf10934-akr:pmrd
Length = 73
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
||||||||||||||||||||||||||||||
Sbjct: 1 aatcatgtggggaaaacattgtagctttcc 30
>52776_ptc-miRf10954-akr:pmrd
Length = 71
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 125 atcatgtggggaaaacattgtagctttcc 153
|||||||||||||||||||||||||||||
Sbjct: 1 atcatgtggggaaaacattgtagctttcc 29
>53776_ptc-miRf11954-akr:pmrd
Length = 73
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagcttt 151
||||||||||||||||||||||||||||
Sbjct: 1 aatcatgtggggaaaacattgtagcttt 28
>54334_ptc-miRf12512-akr:pmrd
Length = 73
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
|||||||||||||||||| |||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttcc 30
>54112_ptc-miRf12290-akr:pmrd
Length = 73
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
|||||||||||||||||| |||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttcc 30
>53974_ptc-miRf12152-akr:pmrd
Length = 73
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
|||||||||||||||||| |||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttcc 30
>53807_ptc-miRf11985-akr:pmrd
Length = 73
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
|||||||||||||||||| |||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttcc 30
>53536_ptc-miRf11714-akr:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
||||||||||||||| ||||||||||||||
Sbjct: 9 aatcatgtggggaaagcattgtagctttcc 38
>54100_ptc-miRf12278-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagcttt 151
||||||||||||||| ||||||||||||
Sbjct: 8 aatcatgtggggaaagcattgtagcttt 35
>53998_ptc-miRf12176-akr:pmrd
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 128 atgtggggaaaacattgtagcttt 151
||||||||||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagcttt 28
>53979_ptc-miRf12157-akr:pmrd
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagcttt 151
|||||||||||||||||| |||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagcttt 28
>53908_ptc-miRf12086-akr:pmrd
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 128 atgtggggaaaacattgtagcttt 151
||||||||||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagcttt 28
>52905_ptc-miRf11083-akr:pmrd
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 128 atgtggggaaaacattgtagcttt 151
||||||||||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagcttt 28
>54326_ptc-miRf12504-akr:pmrd
Length = 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
||||||||||||||| || |||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcc 30
>53745_ptc-miRf11923-akr:pmrd
Length = 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
||||||||||||||| || |||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcc 30
>53729_ptc-miRf11907-akr:pmrd
Length = 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
||||||||||||||| || |||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcc 30
>53148_ptc-miRf11326-akr:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 128 atgtggggaaaacattgtagctttcc 153
|||||||||||||| |||||||||||
Sbjct: 12 atgtggggaaaacactgtagctttcc 37
>53126_ptc-miRf11304-akr:pmrd
Length = 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
||||||||||||||| || |||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcc 30
>52932_ptc-miRf11110-akr:pmrd
Length = 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 124 aatcatgtggggaaaacattgtagctttcc 153
||||||||||||||| || |||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcc 30
