miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 61.9 bits (31), Expect = 6e-11
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 25 ctgcaggacccattagccttgggccctgatgggagacccaagagaattggg 75
||||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct: 89 ctgcaggacccattacccttgggtcctgacgcaagacccaagagaattggg 39
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 58 agacccaagagaattgggtcc 78
|||||||||||||||||||||
Sbjct: 28 agacccaagagaattgggtcc 8
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 26 tgcaggacccattagccttgggccctgatgggagacccaagagaattggg 75
|||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattggg 50
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 agacccaagagaattgggtcc 78
|||||||||||||||||||||
Sbjct: 61 agacccaagagaattgggtcc 81
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 26 tgcaggacccattagccttgggccctgatgggagacccaagagaattggg 75
|||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattggg 50
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 agacccaagagaattgggtcc 78
|||||||||||||||||||||
Sbjct: 61 agacccaagagaattgggtcc 81
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 26 tgcaggacccattagccttgggccctgatgggagacccaagagaattggg 75
|||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattggg 50
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 agacccaagagaattgggtcc 78
|||||||||||||||||||||
Sbjct: 61 agacccaagagaattgggtcc 81
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 19 ggtcctctgcaggacccattagccttgggccctgatgggagacccaaga 67
||||||||||||||||||||| ||||||| ||||| | ||||||||||
Sbjct: 49 ggtcctctgcaggacccattacccttgggtcctgacgcaagacccaaga 1
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 16 ttgggtcctctgcaggacccattagccttggg 47
|||| ||||| |||||||||||||||||||||
Sbjct: 47 ttggttcctccgcaggacccattagccttggg 16
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 59 gacccaagagaattgggtcc 78
||||||||||||||||||||
Sbjct: 87 gacccaagagaattgggtcc 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 acccaattctcttgggtcc 23
|||||||||||||||||||
Sbjct: 70 acccaattctcttgggtcc 88
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 16 ttgggtcctctgcaggacccattagccttggg 47
|||| ||||| |||||||||||||||||||||
Sbjct: 47 ttggttcctccgcaggacccattagccttggg 16
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 59 gacccaagagaattgggtcc 78
||||||||||||||||||||
Sbjct: 87 gacccaagagaattgggtcc 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 acccaattctcttgggtcc 23
|||||||||||||||||||
Sbjct: 70 acccaattctcttgggtcc 88
>52123_ptc-miRf10301-akr:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 16 ttgggtcctctgcaggacccattagccttggg 47
|||| ||||| |||||||||||||||||||||
Sbjct: 40 ttggttcctccgcaggacccattagccttggg 9
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 59 gacccaagagaattgggtcc 78
||||||||||||||||||||
Sbjct: 80 gacccaagagaattgggtcc 61
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 acccaattctcttgggtcc 23
|||||||||||||||||||
Sbjct: 63 acccaattctcttgggtcc 81
>54273_ptc-miRf12451-akr:pmrd
Length = 149
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 26 tgcaggacccattagccttgggccctgatgggagaccca 64
|||||||||||||| ||||||| ||||||| | ||||||
Sbjct: 89 tgcaggacccattaaccttgggtcctgatgcgtgaccca 51
>53676_ptc-miRf11854-akr:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 15 cttgggtcctctgcaggacccatta 39
|||||||||| ||||||||||||||
Sbjct: 59 cttgggtcctgtgcaggacccatta 35
>53675_ptc-miRf11853-akr:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 15 cttgggtcctctgcaggacccatta 39
|||||||||| ||||||||||||||
Sbjct: 59 cttgggtcctgtgcaggacccatta 35
>51960_ptc-miRf10138-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 58 agacccaagagaattgggtcc 78
|||||||||||||||||||||
Sbjct: 91 agacccaagagaattgggtcc 71
>52476_ptc-miRf10654-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 22 cctctgcaggacccattagccttgggccctga 53
|||| |||||||||||||| |||||| |||||
Sbjct: 1 cctccgcaggacccattagtcttgggtcctga 32
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 agacccaagagaattgggtc 77
||||||||||||||||||||
Sbjct: 65 agacccaagagaattgggtc 84
>52276_ptc-miRf10454-akr:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 59 gacccaagagaattgggtcc 78
||||||||||||||||||||
Sbjct: 83 gacccaagagaattgggtcc 64
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 acccaattctcttgggtcc 23
|||||||||||||||||||
Sbjct: 66 acccaattctcttgggtcc 84
>54314_ptc-miRf12492-akr:pmrd
Length = 113
Score = 38.2 bits (19), Expect = 9e-04
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 14 tcttgggtcctc-tgcaggacccattagccttggg 47
|||||||||||| |||||||||||| | |||||||
Sbjct: 70 tcttgggtcctcatgcaggacccatcaaccttggg 36
>52456_ptc-miRf10634-akr:pmrd
Length = 115
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59 gacccaagagaattgggtc 77
|||||||||||||||||||
Sbjct: 6 gacccaagagaattgggtc 24
>52359_ptc-miRf10537-akr:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4 aacccaattctcttgggtc 22
|||||||||||||||||||
Sbjct: 5 aacccaattctcttgggtc 23
