miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52019_ptc-miRf10197-akr:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
Query: 61 cctggatgcgtccacgcccaactccatgttgggtctgaaggtg 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctggatgcgtccacgcccaactccatgttgggtctgaaggtg 103
>52018_ptc-miRf10196-akr:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
Query: 61 cctggatgcgtccacgcccaactccatgttgggtctgaaggtg 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctggatgcgtccacgcccaactccatgttgggtctgaaggtg 103
>52016_ptc-miRf10194-akr:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
Query: 61 cctggatgcgtccacgcccaactccatgttgggtctgaaggtg 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctggatgcgtccacgcccaactccatgttgggtctgaaggtg 103
>53932_ptc-miRf12110-akr:pmrd
Length = 94
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 23
Query: 61 cctggatgcgtccacgcccaac 82
||||||||||||||||||||||
Sbjct: 22 cctggatgcgtccacgcccaac 1
>53931_ptc-miRf12109-akr:pmrd
Length = 94
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 23
Query: 61 cctggatgcgtccacgcccaac 82
||||||||||||||||||||||
Sbjct: 22 cctggatgcgtccacgcccaac 1
>53930_ptc-miRf12108-akr:pmrd
Length = 94
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 23
Query: 61 cctggatgcgtccacgcccaac 82
||||||||||||||||||||||
Sbjct: 22 cctggatgcgtccacgcccaac 1
>53929_ptc-miRf12107-akr:pmrd
Length = 94
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cacttccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttgga 23
Query: 61 cctggatgcgtccacgcccaac 82
||||||||||||||||||||||
Sbjct: 22 cctggatgcgtccacgcccaac 1
>54323_ptc-miRf12501-akr:pmrd
Length = 84
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttggacctg 64
|||||||| ||||||| ||||| | |||||||||| | ||||||| |||||||||||||
Sbjct: 73 tccacgcctaacctcaagttggatttggacgcgtccccacccaactccatgttggacctg 14
Query: 65 gatgcgtccacgc 77
|| ||||||||||
Sbjct: 13 gacgcgtccacgc 1
>52426_ptc-miRf10604-akr:pmrd
Length = 160
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttggacctg 64
||||||||||||| || ||||||||| |||||||| || ||||| ||||||| ||||
Sbjct: 144 tccacgcccaaccccatgttgggtctagacgcgtccccgaccaaccccatgttgtaccta 85
Query: 65 gatgcgtccacgcccaac 82
|| |||||||||||||||
Sbjct: 84 gacgcgtccacgcccaac 67
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 55 gttggacctggatgcgtccacgcccaactccatgttgggtct 96
|||||||||||| |||||||||||||| |||||||||||||
Sbjct: 160 gttggacctggacacgtccacgcccaaccccatgttgggtct 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttggacctg 64
||||||||||||| ||| || ||||| ||||| | ||||||| || ||| ||||||
Sbjct: 78 tccacgcccaaccccacattaggtctaaacgcgacaatgcccaaccccacgttagacctg 19
Query: 65 gatgcgtccacgcccaac 82
|| |||||||||||||||
Sbjct: 18 gacgcgtccacgcccaac 1
>51898_ptc-miRf10076-akr:pmrd
Length = 139
Score = 65.9 bits (33), Expect = 5e-12
Identities = 79/93 (84%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 5 tccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttggacctg 64
||||||||||| | ||||||||| |||||||||| ||||||||| || ||||| | ||
Sbjct: 22 tccacgcccaatcccacgttggg-ctggacgcgttcccgcccaactccaggttggccttg 80
Query: 65 gatgcgtccacgcccaactccatgttgggtctg 97
||||||||||| |||||| || ||||||||||
Sbjct: 81 gatgcgtccacacccaacctcacgttgggtctg 113
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 tccacgcccaacctcacgttgggtctggacgcg 37
||||| |||||||||||||||||||||||||||
Sbjct: 87 tccacacccaacctcacgttgggtctggacgcg 119
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 8e-11
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 12 ccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttggacctggatgcgt 71
|||||| ||| |||||| |||||||| || || |||||| ||||||| |||||| ||||
Sbjct: 79 ccaaccccacattgggtttggacgcgactgcgtccaactctatgttgggcctggacgcgt 20
Query: 72 ccacgcccaactccatgtt 90
|||||||||| |||||||
Sbjct: 19 ccacgcccaatcccatgtt 1
>54019_ptc-miRf12197-akr:pmrd
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 52 catgttggacctggatgcgtccacgcccaactccatgttgggtctg 97
||||||||||||||| |||||| |||||||| ||| ||||||||||
Sbjct: 75 catgttggacctggacgcgtccgcgcccaaccccacgttgggtctg 30
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 9 cgcccaacctcacgttgggtctggacgc 36
||||||||| ||||||||||||||||||
Sbjct: 52 cgcccaaccccacgttgggtctggacgc 25
>52859_ptc-miRf11037-akr:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 9 cgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttggacctggatg 68
||||||| | || |||||||||||||||| | || ||| || ||||||||||| ||| |
Sbjct: 11 cgcccaatcccatgttgggtctggacgcgaccgcgtccacctccatgttggaccgggacg 70
Query: 69 cgtccacgcccaactccatgttggg 93
|||| |||||||| ||||||||||
Sbjct: 71 tgtcctcgcccaaccccatgttggg 95
>52009_ptc-miRf10187-akr:pmrd
Length = 113
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 42 cgcccaactgcatgttggacctggatgcgtccacgcccaac 82
|||| |||| ||||||||||||||| |||||||||||||||
Sbjct: 51 cgcctaactccatgttggacctggacgcgtccacgcccaac 11
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 54 tgttggacctggatgcgtccacgcccaactccatgttgg 92
||||||||||||| ||| ||||| ||||| |||||||||
Sbjct: 104 tgttggacctggacgcgaccacgaccaaccccatgttgg 66
>53953_ptc-miRf12131-akr:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 8e-08
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 22 gttgggtctggacgcgtcttcgcccaactgcatgttggacctggatgcgtccacgcccaa 81
|||||||| ||||| ||| || |||||| | ||||| |||||| ||||||||||||||
Sbjct: 74 gttgggtcaggacgagtccacgtccaactctaagttgggcctggacgcgtccacgcccaa 15
Query: 82 ctccatgttgggtc 95
||| | ||||||||
Sbjct: 14 ctctaagttgggtc 1
>53433_ptc-miRf11611-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 8e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 52 catgttggacctggatgcgtccacgcccaactccatgttgggtctg 97
|||||||||||| | ||||||||||||||| ||| ||||||||||
Sbjct: 60 catgttggacctatacgcgtccacgcccaaccccacgttgggtctg 15
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctgga 33
||||||||||||| |||||||||||||||
Sbjct: 41 tccacgcccaaccccacgttgggtctgga 13
>52764_ptc-miRf10942-akr:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 45 ccaactgcatgttggacctggatgcgtccacgc 77
|||||| ||||||||||||||| ||||||||||
Sbjct: 68 ccaactccatgttggacctggacgcgtccacgc 100
>51865_ptc-miRf10043-akr:pmrd
Length = 108
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 45 ccaactgcatgttggacctggatgcgtccacgc 77
|||||| ||||||||||||||| ||||||||||
Sbjct: 64 ccaactccatgttggacctggacgcgtccacgc 96
>51864_ptc-miRf10042-akr:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 45 ccaactgcatgttggacctggatgcgtccacgc 77
|||||| ||||||||||||||| ||||||||||
Sbjct: 62 ccaactccatgttggacctggacgcgtccacgc 94
>53057_ptc-miRf11235-akr:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 42 cgcccaactgcatgttggacctggatgcgtccacgcccaactccatgttggg 93
|||||||| |||||||| | ||| |||||||||||||||| ||| ||||||
Sbjct: 76 cgcccaaccacatgttggccatggctgcgtccacgcccaaccccacgttggg 25
Score = 42.1 bits (21), Expect = 8e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggacgcg 37
||||||||||||| ||||||||| |||||||||
Sbjct: 47 tccacgcccaaccccacgttggg-ctggacgcg 16
>53056_ptc-miRf11234-akr:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 42 cgcccaactgcatgttggacctggatgcgtccacgcccaactccatgttggg 93
|||||||| |||||||| | ||| |||||||||||||||| ||| ||||||
Sbjct: 76 cgcccaaccacatgttggccatggctgcgtccacgcccaaccccacgttggg 25
Score = 42.1 bits (21), Expect = 8e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggacgcg 37
||||||||||||| ||||||||| |||||||||
Sbjct: 47 tccacgcccaaccccacgttggg-ctggacgcg 16
>52824_ptc-miRf11002-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 gttggacctggatgcgtccacgcccaac 82
||||||||||||||||||| ||||||||
Sbjct: 1 gttggacctggatgcgtccgcgcccaac 28
>52728_ptc-miRf10906-akr:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 53 atgttggacctggatgcgtccacgccca 80
|||||||||||||| |||||||||||||
Sbjct: 28 atgttggacctggacgcgtccacgccca 1
>54053_ptc-miRf12231-akr:pmrd
Length = 73
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggacgcgtc 39
|||| |||||||| |||| ||||||||||||||||
Sbjct: 50 tccatgcccaaccccacggtgggtctggacgcgtc 16
>53050_ptc-miRf11228-akr:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggac 34
|||| |||||||| ||||||||||||||||
Sbjct: 30 tccatgcccaaccccacgttgggtctggac 1
>53049_ptc-miRf11227-akr:pmrd
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggac 34
|||| |||||||| ||||||||||||||||
Sbjct: 39 tccatgcccaaccccacgttgggtctggac 10
>52787_ptc-miRf10965-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 gttggacctggatgcgtccacgccca 80
|||||||||||| |||||||||||||
Sbjct: 3 gttggacctggacgcgtccacgccca 28
>52786_ptc-miRf10964-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 gttggacctggatgcgtccacgccca 80
|||||||||||| |||||||||||||
Sbjct: 4 gttggacctggacgcgtccacgccca 29
>52428_ptc-miRf10606-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttggacctg 64
||||||||||||| ||| || ||||| ||||| | ||||||| || ||| ||||||
Sbjct: 78 tccacgcccaaccccacattaggtctaaacgcgacaatgcccaaccccacgttagacctg 19
Query: 65 gatgcgtccacgcccaac 82
|| |||||||||||||||
Sbjct: 18 gacgcgtccacgcccaac 1
>52427_ptc-miRf10605-akr:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 5 tccacgcccaacctcacgttgggtctggacgcgtcttcgcccaactgcatgttggacctg 64
||||||||||||| ||| || ||||| ||||| | ||||||| || ||| ||||||
Sbjct: 89 tccacgcccaaccccacattaggtctaaacgcgacaatgcccaaccccacgttagacctg 30
Query: 65 gatgcgtccacgcccaac 82
|| |||||||||||||||
Sbjct: 29 gacgcgtccacgcccaac 12
>52310_ptc-miRf10488-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 52 catgttggacctggatgcgtccacgcccaactccatgttgggtctg 97
|||||||||||| | | ||||||||||||| |||||||| |||||
Sbjct: 4 catgttggacctcaacgtgtccacgcccaaccccatgttgagtctg 49
>52279_ptc-miRf10457-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 52 catgttggacctggatgcgtccacgcccaactccatgttgggtctg 97
|||||||||||| ||||| | ||||| |||| ||||||| ||||||
Sbjct: 48 catgttggacctagatgcattcacgctcaaccccatgttaggtctg 93
>53604_ptc-miRf11782-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 69 cgtccacgcccaactccatgttggg 93
|||||||||||||||||| ||||||
Sbjct: 81 cgtccacgcccaactccaagttggg 57
>52885_ptc-miRf11063-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 69 cgtccacgcccaactccatgttggg 93
|||||||||||||||||| ||||||
Sbjct: 81 cgtccacgcccaactccaagttggg 57
>51919_ptc-miRf10097-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 69 cgtccacgcccaactccatgttggg 93
|||||||||||||||||| ||||||
Sbjct: 71 cgtccacgcccaactccaagttggg 47
>53103_ptc-miRf11281-akr:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 68 gcgtccacgcccaactccatgttgggtc 95
||||||||||||||||| | ||||||||
Sbjct: 1 gcgtccacgcccaactctaagttgggtc 28
