miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53762_ptc-miRf11940-akr:pmrd
Length = 121
Score = 97.6 bits (49), Expect = 2e-21
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 15 gacccggccgaccctggcatgagaccggtccgggtctaagcaaaaacccgcctgggagtt 74
|||||||||||||| ||| || |||||||||||||||||| |||||||||| || ||||
Sbjct: 100 gacccggccgacccgggcctgggaccggtccgggtctaagtaaaaacccgcggggaagtt 41
Query: 75 ggctcagcgaaacccggtcgacccg 99
||| | |||||||||||||||||||
Sbjct: 40 ggcccggcgaaacccggtcgacccg 16
>53781_ptc-miRf11959-akr:pmrd
Length = 126
Score = 79.8 bits (40), Expect = 4e-16
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 38 accggtccgggtctaagcaaaaacccgcctgggagttggctcagcgaaacccggtcgacc 97
||||||||||||||||| ||||||||| |||||||||||| | | |||||||||||||||
Sbjct: 83 accggtccgggtctaagtaaaaacccgtctgggagttggcccggagaaacccggtcgacc 24
>51838_ptc-miRf10016-akr:pmrd
Length = 112
Score = 69.9 bits (35), Expect = 4e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 33 atgagaccggtccgggtctaagcaaaaacccgcctgggagttggctcagcgaaacccggt 92
|||| |||||||||||||||||||||||| ||||||| |||||| | | ||||||| ||
Sbjct: 31 atgaaaccggtccgggtctaagcaaaaactcgcctggaagttggtccggtgaaacccagt 90
Query: 93 cgacccg 99
|||||||
Sbjct: 91 cgacccg 97
>52876_ptc-miRf11054-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 44 ccgggtctaagcaaaaacccgcctgggagttggc 77
||||||||||| ||||||||||||| ||||||||
Sbjct: 35 ccgggtctaagtaaaaacccgcctgagagttggc 2
>53339_ptc-miRf11517-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 aacccggtcgacccgggtaaaccc 108
|||||||||||| |||||||||||
Sbjct: 47 aacccggtcgactcgggtaaaccc 70
>52419_ptc-miRf10597-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 45 cgggtctaagcaaaaacccgcctgggagttggctcagcgaaacccggtcgac 96
||||| |||| ||||| | || ||||| ||||| |||| |||||||||||||
Sbjct: 37 cgggtttaagaaaaaatcagcttgggatttggcccagcaaaacccggtcgac 88
>52199_ptc-miRf10377-akr:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 aacccggtcgacccgggtaaaccc 108
||||||| ||||||||||||||||
Sbjct: 39 aacccgggcgacccgggtaaaccc 16
