miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52311_ptc-miRf10489-akr:pmrd
Length = 110
Score = 101 bits (51), Expect = 1e-22
Identities = 88/99 (88%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gcagcgaacacctgattcgctgcggacaacacaattcggcagcgaaaccctgattcgctg 63
||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 6 gcagcgaacacttgattcgctgcggacaacacaattcagcagaaaatacctgattcgcta 65
Query: 64 cggataacac-aattcggcagtgaacacctgattcgctg 101
| || ||||| |||||||||| |||||||||||||||||
Sbjct: 66 cagacaacacaaattcggcagcgaacacctgattcgctg 104
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 37 attcggcagcgaaaccctgattcgctgcggataacacaattcggcagtgaacacctgatt 96
||||||||||||| | |||||||||||||| |||||||||| |||| || ||||||||
Sbjct: 1 attcggcagcgaacacttgattcgctgcggacaacacaattcagcagaaaatacctgatt 60
Query: 97 cgct 100
||||
Sbjct: 61 cgct 64
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 75 attcggcagtgaacacctgattcgctgcgga 105
||||||||| |||||| ||||||||||||||
Sbjct: 1 attcggcagcgaacacttgattcgctgcgga 31
>53082_ptc-miRf11260-akr:pmrd
Length = 109
Score = 97.6 bits (49), Expect = 2e-21
Identities = 81/89 (91%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 19 ttcgctgcggacaacacaa-ttcggcagcgaaaccctgattcgctgcggataacacaa-t 76
||||||||||||||||||| ||| |||| ||| |||||||||||||||| ||||||| |
Sbjct: 1 ttcgctgcggacaacacaaattccgcagtgaacacctgattcgctgcggacaacacaaat 60
Query: 77 tcggcagtgaacacctgattcgctgcgga 105
|| ||||||||||||||||||||||||||
Sbjct: 61 tccgcagtgaacacctgattcgctgcgga 89
Score = 89.7 bits (45), Expect = 4e-19
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 4 gcagcgaacacctgattcgctgcggacaacac-aattcggcagcgaaaccctgattcgct 62
|||| ||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 25 gcagtgaacacctgattcgctgcggacaacacaaattccgcagtgaacacctgattcgct 84
Query: 63 gcggataacacaattcggcag 83
||||| |||||||||| ||||
Sbjct: 85 gcggacaacacaattcagcag 105
Score = 75.8 bits (38), Expect = 6e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 gcagcgaacacctgattcgctgcggacaacacaattcggcagcgaa 49
|||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 64 gcagtgaacacctgattcgctgcggacaacacaattcagcagcgaa 109
>52234_ptc-miRf10412-akr:pmrd
Length = 103
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 17 gattcgctgcggacaacacaattcggcagcgaaaccctgattcgctgcggataacacaat 76
|||| ||||| |||| |||||||||||||||||| | |||||||||||||| | | |||
Sbjct: 88 gatttgctgcagacaccacaattcggcagcgaaaac-tgattcgctgcggacactataat 30
Query: 77 tcggcagtgaacacctgattcgctgc 102
| ||||||||||||||||||||||||
Sbjct: 29 ttggcagtgaacacctgattcgctgc 4
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 15 ctgattcgctgcggacaacacaattcggcagcgaaaccctgattcgctgc 64
||||||||||||||||| | |||| ||||| ||| |||||||||||||
Sbjct: 53 ctgattcgctgcggacactataatttggcagtgaacacctgattcgctgc 4
>53083_ptc-miRf11261-akr:pmrd
Length = 68
Score = 77.8 bits (39), Expect = 1e-15
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 52 cctgattcgctgcggataacacaa-ttcggcagtgaacacctgattcgctgcgga 105
|||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct: 14 cctgattcgctgcggacaacacaaattccgcagtgaacacctgattcgctgcgga 68
Score = 73.8 bits (37), Expect = 2e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 gcagcgaacacctgattcgctgcggacaacac-aattcggcagcgaaaccctgattcgct 62
|||| ||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 4 gcagtgaacacctgattcgctgcggacaacacaaattccgcagtgaacacctgattcgct 63
Query: 63 gcgga 67
|||||
Sbjct: 64 gcgga 68
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 gcagtgaacacctgattcgctgcgga 105
||||||||||||||||||||||||||
Sbjct: 4 gcagtgaacacctgattcgctgcgga 29
>53058_ptc-miRf11236-akr:pmrd
Length = 71
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 70 acacaattcggcagtgaacacctgattcgctgcgga 105
|||||||||||||| |||||||||||||||||||||
Sbjct: 34 acacaattcggcagcgaacacctgattcgctgcgga 69
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 32 acacaattcggcagcgaaaccctgattcgctgcgga 67
|||||||||||||||||| ||||||||||||||||
Sbjct: 34 acacaattcggcagcgaacacctgattcgctgcgga 69
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 gcagcgaacacctgattcgctgcgga 29
||||||||||||||||||||||||||
Sbjct: 44 gcagcgaacacctgattcgctgcgga 69
>53938_ptc-miRf12116-akr:pmrd
Length = 71
Score = 56.0 bits (28), Expect = 5e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 4 gcagcgaacacctgattcgctgcggacaacacaattcggcagcgaaaccctgattcgctg 63
||||||| || ||||||||||| ||||| || |||||| ||||||| ||||||||||||
Sbjct: 6 gcagcgagcaactgattcgctgtggacatcaaaattcgacagcgaacacctgattcgctg 65
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 53 ctgattcgctgcggataacacaattcggcagtgaacacctgattcgctg 101
||||||||||| ||| | || |||||| ||| |||||||||||||||||
Sbjct: 17 ctgattcgctgtggacatcaaaattcgacagcgaacacctgattcgctg 65
>53076_ptc-miRf11254-akr:pmrd
Length = 67
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 tcggcagtgaacacctgattcgctgcg 103
|||||||||||||||||||||||||||
Sbjct: 1 tcggcagtgaacacctgattcgctgcg 27
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 gcagcgaacacctgattcgctgcggacaacacaattcggcagcgaaaccctgattc 59
|||| ||||||||||||||||||| | |||||| ||| ||||||| ||||||||
Sbjct: 4 gcagtgaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
Score = 46.1 bits (23), Expect = 5e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 39 tcggcagcgaaaccctgattcgctgcggataacacaattcggcagtgaacacctgattc 97
||||||| ||| |||||||||||||| | |||||| ||| ||| |||||||||||||
Sbjct: 1 tcggcagtgaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
>53075_ptc-miRf11253-akr:pmrd
Length = 67
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 tcggcagtgaacacctgattcgctgcg 103
|||||||||||||||||||||||||||
Sbjct: 1 tcggcagtgaacacctgattcgctgcg 27
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 gcagcgaacacctgattcgctgcggacaacacaattcggcagcgaaaccctgattc 59
|||| ||||||||||||||||||| | |||||| ||| ||||||| ||||||||
Sbjct: 4 gcagtgaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
Score = 46.1 bits (23), Expect = 5e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 39 tcggcagcgaaaccctgattcgctgcggataacacaattcggcagtgaacacctgattc 97
||||||| ||| |||||||||||||| | |||||| ||| ||| |||||||||||||
Sbjct: 1 tcggcagtgaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
>53756_ptc-miRf11934-akr:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/39 (92%), Gaps = 2/39 (5%)
Strand = Plus / Minus
Query: 26 cggacaacacaattcggcagcgaaaccctgattcgctgc 64
||||||||||| ||||||||||||| ||||||||||||
Sbjct: 45 cggacaacacacttcggcagcgaaa--ctgattcgctgc 9
>53989_ptc-miRf12167-akr:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 16 tgattcgctgcggacaacacaattcggcagcgaaa 50
||||||||| | |||| ||||||||||||||||||
Sbjct: 48 tgattcgctacagacaccacaattcggcagcgaaa 14
>53007_ptc-miRf11185-akr:pmrd
Length = 63
Score = 46.1 bits (23), Expect = 5e-06
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 18 attcgctgcggacaacacaattcggcagcgaaaccctgattcgctgc 64
||||||| || |||||||||||| ||||||||| ||||||||||||
Sbjct: 48 attcgctacgaacaacacaattcagcagcgaaa-actgattcgctgc 3
>54063_ptc-miRf12241-akr:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 attcgctgcggacaacacaattcggcagcgaaac 51
||||||||| | ||||||||||| ||||||||||
Sbjct: 56 attcgctgcaggcaacacaattcagcagcgaaac 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 15 ctgattcgctgcggacaacacaattcggcagcgaaaccctgattcgctgcggataacaca 74
|||||||||| | |||| |||||||||||||||||| || ||||||||| | ||||||
Sbjct: 17 ctgattcgcttctgaca-cacaattcggcagcgaaa-actcattcgctgcaggcaacaca 74
Query: 75 attcggcag 83
|||| ||||
Sbjct: 75 attcagcag 83
>53972_ptc-miRf12150-akr:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 16 tgattcgctgcggacaacacaatt 39
|||||||||||| |||||||||||
Sbjct: 61 tgattcgctgcgaacaacacaatt 38
