miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53943_ptc-miRf12121-akr:pmrd
Length = 87
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1 acacacccatgcgccaggtggctctcgggcgaagccaatcgagccttttgccatgaccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 acacacccatgcgccaggtggctctcgggcgaagccaatcgagccttttgccatgaccca 27
Query: 61 agcgccaggtggcgctcggttgtgt 85
|||||||||||||||||||||||||
Sbjct: 26 agcgccaggtggcgctcggttgtgt 2
>52031_ptc-miRf10209-akr:pmrd
Length = 103
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 6 cccatgcgccaggtggctctcgggcgaagccaatcgagccttttgccatgacccaagcgc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccatgcgccaggtggctctcgggcgaagccaatcgagccttttgccatgacccaagcgc 60
Query: 66 caggtggcgctcggttgtgt 85
||||||||||||||||||||
Sbjct: 61 caggtggcgctcggttgtgt 80
>52972_ptc-miRf11150-akr:pmrd
Length = 76
Score = 79.8 bits (40), Expect = 3e-16
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 33 agccaatcgagccttttgccatgacccaagcgccaggtggcgct 76
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 46 agccaatcgagccttttgccaagacccaagcgccaggtggcgct 3
>52361_ptc-miRf10539-akr:pmrd
Length = 124
Score = 79.8 bits (40), Expect = 3e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 33 agccaatcgagccttttgccatgacccaagcgccaggtggcgct 76
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 32 agccaatcgagccttttgccaagacccaagcgccaggtggcgct 75
>52360_ptc-miRf10538-akr:pmrd
Length = 138
Score = 79.8 bits (40), Expect = 3e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 33 agccaatcgagccttttgccatgacccaagcgccaggtggcgct 76
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 39 agccaatcgagccttttgccaagacccaagcgccaggtggcgct 82
>54183_ptc-miRf12361-akr:pmrd
Length = 124
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 cttttgccatgacccaagcgccaggtggcgct 76
||||| ||| ||||||||||||||||||||||
Sbjct: 2 cttttaccaagacccaagcgccaggtggcgct 33
>52157_ptc-miRf10335-akr:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 cttttgccatgacccaagcgccaggtggcgct 76
||||| ||| ||||||||||||||||||||||
Sbjct: 131 cttttaccaagacccaagcgccaggtggcgct 100
>54182_ptc-miRf12360-akr:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 47 tttgccatgacccaagcgccaggtggcgct 76
|||||||||||||| |||||| ||||||||
Sbjct: 91 tttgccatgacccatgcgccacgtggcgct 62
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 46 ttttgccatgacccaagcgccaggtggcgct 76
|||||| | ||||||| ||||||||||||||
Sbjct: 1 ttttgctaagacccaaacgccaggtggcgct 31
>54181_ptc-miRf12359-akr:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 47 tttgccatgacccaagcgccaggtggcgct 76
|||||||||||||| |||||| ||||||||
Sbjct: 91 tttgccatgacccatgcgccacgtggcgct 62
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 46 ttttgccatgacccaagcgccaggtggcgct 76
|||||| | ||||||| ||||||||||||||
Sbjct: 1 ttttgctaagacccaaacgccaggtggcgct 31
>52343_ptc-miRf10521-akr:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 cacacccatgcgccaggtggc 22
|||||||||||||||||||||
Sbjct: 2 cacacccatgcgccaggtggc 22
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61 agcgccaggtggcgctcgg 79
|||||||||||||||||||
Sbjct: 56 agcgccaggtggcgctcgg 74
