miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52378_ptc-miRf10556-akr:pmrd
Length = 101
Score = 81.8 bits (41), Expect = 9e-17
Identities = 69/76 (90%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 19 cgtgaattataattcacgtcctactgttcatgcatgaacagtg-gcgcgaattataattc 77
|||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||
Sbjct: 21 cgtgaattataattcacgtcctactgttca--catgaacagcgagcgtgaattataattc 78
Query: 78 acgtccactgttcatg 93
||| |||||| |||||
Sbjct: 79 acgcccactgctcatg 94
Score = 52.0 bits (26), Expect = 8e-08
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 15 aggacgtgaattataattcacgtcctactgttca 48
|||||||||||||||||||||| |||||||||||
Sbjct: 42 aggacgtgaattataattcacg-cctactgttca 10
Score = 42.1 bits (21), Expect = 7e-05
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 53 tgaacagt-ggcgcgaattataattcacgtcc-actgttca 91
|||||||| |||| |||||||||||||||||| ||||||||
Sbjct: 10 tgaacagtaggcgtgaattataattcacgtcctactgttca 50
>53002_ptc-miRf11180-akr:pmrd
Length = 78
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 61 ggcgcgaattataattcacgtccactgttcatg 93
|||| ||||||||||||||||||||||||||||
Sbjct: 51 ggcgtgaattataattcacgtccactgttcatg 19
Score = 56.0 bits (28), Expect = 5e-09
Identities = 42/44 (95%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 19 cgtgaattataattcacgtcctactgttcatgca-tgaacagtg 61
||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 49 cgtgaattataattcacgtcc-actgttcatgcagtgaacagtg 7
Score = 52.0 bits (26), Expect = 8e-08
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 41 actgttca-tgcatgaacagtgg-cgcgaattataattcacgtccactgttcat 92
|||||||| |||||||||||||| || ||||||||||||||| ||| |||||||
Sbjct: 8 actgttcactgcatgaacagtggacgtgaattataattcacgcccattgttcat 61
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tgcatgaacacaggacgtgaattataattcacg 36
|||||||||| |||||||||||||||||||||
Sbjct: 17 tgcatgaacagtggacgtgaattataattcacg 49
>53001_ptc-miRf11179-akr:pmrd
Length = 78
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 61 ggcgcgaattataattcacgtccactgttcatg 93
|||| ||||||||||||||||||||||||||||
Sbjct: 51 ggcgtgaattataattcacgtccactgttcatg 19
Score = 56.0 bits (28), Expect = 5e-09
Identities = 42/44 (95%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 19 cgtgaattataattcacgtcctactgttcatgca-tgaacagtg 61
||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 49 cgtgaattataattcacgtcc-actgttcatgcagtgaacagtg 7
Score = 52.0 bits (26), Expect = 8e-08
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 41 actgttca-tgcatgaacagtgg-cgcgaattataattcacgtccactgttcat 92
|||||||| |||||||||||||| || ||||||||||||||| ||| |||||||
Sbjct: 8 actgttcactgcatgaacagtggacgtgaattataattcacgcccattgttcat 61
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tgcatgaacacaggacgtgaattataattcacg 36
|||||||||| |||||||||||||||||||||
Sbjct: 17 tgcatgaacagtggacgtgaattataattcacg 49
