miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54239_ptc-miRf12417-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 87/105 (82%), Gaps = 1/105 (0%)
Strand = Plus / Minus
Query: 4 ggacccaatgctcatggt-cctgcatcaggaccaatttcgcatgggtcctgcgttaagac 62
||||||||||||| |||| ||| | || ||| | |||| ||||||||||| |||| | |
Sbjct: 105 ggacccaatgctcttggttcctacgtcgggatctattttgcatgggtcctatgttagggc 46
Query: 63 ccaagagaaatgagttctgccgcaggacctaaaagcattgggtcc 107
|||||||||||| | ||| ||||||||| || ||||||||||||
Sbjct: 45 ccaagagaaatggatcctgacgcaggacccaagagcattgggtcc 1
>52359_ptc-miRf10537-akr:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ctgccgcaggacctaaaagcattgggtcctga 110
||||||| ||||||||||| ||||||||||||
Sbjct: 52 ctgccgcgggacctaaaagaattgggtcctga 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 44 atgggtcctgcgttaagacccaagagaa 71
||||||||||||| | ||||||||||||
Sbjct: 39 atgggtcctgcgtcacgacccaagagaa 12
>53414_ptc-miRf11592-akr:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 45 tgggtcctgcgttaagacccaagagaaatgagttctgccgcaggacctaaaagcattg 102
|||||||||||| |||| |||||||||| | ||||||||||||| || |||||||
Sbjct: 24 tgggtcctgcgtccggacctaagagaaatggatactgccgcaggaccaaagagcattg 81
>52585_ptc-miRf10763-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 45 tgggtcctgcgttaagacccaagagaaatgagttctgccgcaggacctaaaagcattg 102
|||||||||||| |||| |||||||||| | ||||||||||||| || |||||||
Sbjct: 67 tgggtcctgcgtccggacctaagagaaatggatactgccgcaggaccaaagagcattg 10
>52584_ptc-miRf10762-akr:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 45 tgggtcctgcgttaagacccaagagaaatgagttctgccgcaggacctaaaagcattg 102
|||||||||||| |||| |||||||||| | ||||||||||||| || |||||||
Sbjct: 75 tgggtcctgcgtccggacctaagagaaatggatactgccgcaggaccaaagagcattg 18
>52075_ptc-miRf10253-akr:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 43 catgggtcctgcgttaagacccaa 66
|||||||||||||||| |||||||
Sbjct: 124 catgggtcctgcgttaggacccaa 101
