miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53123_ptc-miRf11301-akr:pmrd
Length = 153
Score = 65.9 bits (33), Expect = 8e-12
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 85 atattaagttggttgagaattacaattacaa-taaaactaaatcatgtgggg-aagcact 142
||||| || |||||||||||||||||||||| ||| ||||||||||||||| ||| |||
Sbjct: 81 atattgagctggttgagaattacaattacaagtaaggctaaatcatgtggggaaagtact 140
Query: 143 gtaactttcctca 155
||| |||||||||
Sbjct: 141 gtagctttcctca 153
>53549_ptc-miRf11727-akr:pmrd
Length = 82
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 121 ctaaatcatgtggggaagcactgtaactttc 151
||||||||||||||||||||||||| |||||
Sbjct: 3 ctaaatcatgtggggaagcactgtagctttc 33
>52443_ptc-miRf10621-akr:pmrd
Length = 152
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 121 ctaaatcatgtggggaagcactgtaactttc 151
||||||||||||||||||||||||| |||||
Sbjct: 116 ctaaatcatgtggggaagcactgtagctttc 146
>53067_ptc-miRf11245-akr:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 122 taaatcatgtggggaagcactgtaactttc 151
|||||||||||| ||||||||||| |||||
Sbjct: 4 taaatcatgtggagaagcactgtagctttc 33
>54326_ptc-miRf12504-akr:pmrd
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 124 aatcatgtgggg-aagcactgtaactttcctca 155
|||||||||||| |||||||||| |||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctca 33
>53745_ptc-miRf11923-akr:pmrd
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 124 aatcatgtgggg-aagcactgtaactttcctca 155
|||||||||||| |||||||||| |||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctca 33
>53536_ptc-miRf11714-akr:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 116 taaaactaaatcatgtgggg-aagcactgtaactttcctca 155
||||||| |||||||||||| ||||| |||| |||||||||
Sbjct: 1 taaaacttaatcatgtggggaaagcattgtagctttcctca 41
>53126_ptc-miRf11304-akr:pmrd
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 124 aatcatgtgggg-aagcactgtaactttcctca 155
|||||||||||| |||||||||| |||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctca 33
>53055_ptc-miRf11233-akr:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtggattgctatagtgtttcctcatatg 29
|||||||||||| ||| ||||||||||||
Sbjct: 47 tgtggattgctacagtttttcctcatatg 75
>52932_ptc-miRf11110-akr:pmrd
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 124 aatcatgtgggg-aagcactgtaactttcctca 155
|||||||||||| |||||||||| |||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctca 33
