miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53115_ptc-miRf11293-akr:pmrd
Length = 104
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 atggttggagaagcttccgatctccctcaaaggcttcctctataattgccttacatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggttggagaagcttccgatctccctcaaaggcttcctctataattgccttacatgatg 60
Query: 61 gcattagtggactcctttggggagatggagagcttactccccat 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcattagtggactcctttggggagatggagagcttactccccat 104
>52049_ptc-miRf10227-akr:pmrd
Length = 104
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 atggttggagaagcttccgatctccctcaaaggcttcctctataattgccttacatgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggttggagaagcttccgatctccctcaaaggcttcctctataattgccttacatgatg 60
Query: 61 gcattagtggactcctttggggagatggagagcttactccccat 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcattagtggactcctttggggagatggagagcttactccccat 104
>53038_ptc-miRf11216-akr:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 1 atggttggagaagcttccgatctccctcaaaggcttcc 38
||||||||||||||| || |||||||||| ||||||||
Sbjct: 118 atggttggagaagctcccaatctccctcagaggcttcc 81
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 79 ggggagatggagagcttactcccca 103
|||||||| ||||||||||||||||
Sbjct: 26 ggggagattgagagcttactcccca 2
>52412_ptc-miRf10590-akr:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 atggttggagaagcttccgatctccctcaaaggcttcc 38
||||||||||||||| || |||||||||| ||||||||
Sbjct: 1 atggttggagaagctcccaatctccctcagaggcttcc 38
Score = 40.1 bits (20), Expect = 3e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 74 cctttggg-gagatggagagcttactccccat 104
|||||||| ||||| |||||||||||||||||
Sbjct: 87 cctttgggtgagattgagagcttactccccat 118
