miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52638_ptc-miRf10816-akr:pmrd
Length = 115
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 1 gtttgatccaacagttggatcacactcatagttcgtaagtagtttccggagacctttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gtttgatccaacagttggatcacactcatagttcgtaagtagtttccggagacctttttc 49
Query: 61 cttgaaacggccataacttttgatccgaccgttggatcgcgc 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 cttgaaacggccataacttttgatccgaccgttggatcgcgc 7
>53374_ptc-miRf11552-akr:pmrd
Length = 97
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 72 cataacttttgatccgaccgttggatcgcgc 102
|||||||||||||||||||||||||||||||
Sbjct: 65 cataacttttgatccgaccgttggatcgcgc 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 70 gccataacttttgatccgaccgttggatcgc 100
|||| ||||||||||||||||||||||||||
Sbjct: 35 gccacaacttttgatccgaccgttggatcgc 5
>53375_ptc-miRf11553-akr:pmrd
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 72 cataacttttgatccgaccgttggatcgc 100
|||||||||||||||||||||||||||||
Sbjct: 61 cataacttttgatccgaccgttggatcgc 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 70 gccataacttttgatccgaccgttggatcgc 100
|||| ||||||||||||||||||||||||||
Sbjct: 31 gccacaacttttgatccgaccgttggatcgc 1
>53425_ptc-miRf11603-akr:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 62 ttgaaacggccataacttttgatccgaccgttg 94
|||||| |||||||||||||||| |||||||||
Sbjct: 22 ttgaaagggccataacttttgattcgaccgttg 54
>53394_ptc-miRf11572-akr:pmrd
Length = 157
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 ggccataacttttgatccgaccgttggatcg 99
||||| ||||||| |||||||||||||||||
Sbjct: 5 ggccaaaacttttcatccgaccgttggatcg 35
>53213_ptc-miRf11391-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 75 aacttttgatccgaccgttggatcgcgc 102
|||| ||||||||||||||| |||||||
Sbjct: 96 aactattgatccgaccgttgcatcgcgc 69
>53212_ptc-miRf11390-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 75 aacttttgatccgaccgttggatcgcgc 102
|||| ||||||||||||||| |||||||
Sbjct: 96 aactattgatccgaccgttgcatcgcgc 69
