miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54299_ptc-miRf12477-akr:pmrd
Length = 108
Score = 214 bits (108), Expect = 2e-56
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 2 aacgcaccatagcccaacgtggagttgggcatggacgcgtccctgacccaatatagggtt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 aacgcaccatagcccaacgtggagttgggcatggacgcgtccctgacccaatatagggtt 49
Query: 62 gggcgcggatgcaccatagcccaacatggagttggacacggatgcgtc 109
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 gggcgcggatgcaccatagcccaacatggagttggacacggatgcgtc 1
Score = 58.0 bits (29), Expect = 2e-09
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 72 gcaccatagcccaacatggagttggacacggatgcgtccctagcccaacttggagttggg 131
||||||||||||||| ||||||||| || ||| |||||||| ||||| | | ||||||
Sbjct: 105 gcaccatagcccaacgtggagttgggcatggacgcgtccctgacccaatatagggttggg 46
Query: 132 cgcagacacgtcctaacccaacttggagttgggcacggatgcgtc 176
||| || | | || |||||| ||||||||| ||||||||||||
Sbjct: 45 cgcggatgcaccatagcccaacatggagttggacacggatgcgtc 1
>53050_ptc-miRf11228-akr:pmrd
Length = 130
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 cccaacgtggagttgggcatggacgcgtcc 43
|||||||||| |||||||||||||||||||
Sbjct: 8 cccaacgtggggttgggcatggacgcgtcc 37
>53049_ptc-miRf11227-akr:pmrd
Length = 147
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 cccaacgtggagttgggcatggacgcgtcc 43
|||||||||| |||||||||||||||||||
Sbjct: 17 cccaacgtggggttgggcatggacgcgtcc 46
>53604_ptc-miRf11782-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 agcccaacttggagttgggcg 133
|||||||||||||||||||||
Sbjct: 55 agcccaacttggagttgggcg 75
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 12 agcccaacgtggagttgggcatggacgcgtcc 43
|||||||| ||||||||||| |||||| ||||
Sbjct: 55 agcccaacttggagttgggcgtggacgagtcc 86
>53073_ptc-miRf11251-akr:pmrd
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 20 gtggagttgggcatggacgcgtccctgacccaa 52
||||||||||| ||| ||||||||||||||||
Sbjct: 7 gtggagttgggtgtggtcgcgtccctgacccaa 39
>52885_ptc-miRf11063-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 agcccaacttggagttgggcg 133
|||||||||||||||||||||
Sbjct: 55 agcccaacttggagttgggcg 75
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 12 agcccaacgtggagttgggcatggacgcgtcc 43
|||||||| ||||||||||| |||||| ||||
Sbjct: 55 agcccaacttggagttgggcgtggacgagtcc 86
>51919_ptc-miRf10097-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 agcccaacttggagttgggcg 133
|||||||||||||||||||||
Sbjct: 45 agcccaacttggagttgggcg 65
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 12 agcccaacgtggagttgggcatggacgcgtcc 43
|||||||| ||||||||||| |||||| ||||
Sbjct: 45 agcccaacttggagttgggcgtggacgagtcc 76
>53914_ptc-miRf12092-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 114 gcccaacttggagttgggcg 133
||||||||||||||||||||
Sbjct: 76 gcccaacttggagttgggcg 95
>53057_ptc-miRf11235-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 12 agcccaacgtggagttgggcatggacgc 39
|||||||||||| ||||||| |||||||
Sbjct: 23 agcccaacgtggggttgggcgtggacgc 50
>53056_ptc-miRf11234-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 12 agcccaacgtggagttgggcatggacgc 39
|||||||||||| ||||||| |||||||
Sbjct: 23 agcccaacgtggggttgggcgtggacgc 50
>52985_ptc-miRf11163-akr:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 agttgggcatggacgcgtcc 43
||||||||||||||||||||
Sbjct: 29 agttgggcatggacgcgtcc 10
>52984_ptc-miRf11162-akr:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 agttgggcatggacgcgtcc 43
||||||||||||||||||||
Sbjct: 41 agttgggcatggacgcgtcc 22
>52371_ptc-miRf10549-akr:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 agttgggcatggacgcgtcc 43
||||||||||||||||||||
Sbjct: 74 agttgggcatggacgcgtcc 93
>52370_ptc-miRf10548-akr:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 agttgggcatggacgcgtcc 43
||||||||||||||||||||
Sbjct: 66 agttgggcatggacgcgtcc 85
