miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52236_ptc-miRf10414-akr:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tcgctgtcgattttcgaatcggcagtgacgcaagtttggcagccgatttgtgagtcagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgctgtcgattttcgaatcggcagtgacgcaagtttggcagccgatttgtgagtcagta 60
Query: 61 acgatgcagttttagctgctgatttctgaatcgacagtga 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgatgcagttttagctgctgatttctgaatcgacagtga 100
>52782_ptc-miRf10960-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 70 ttttagctgctgatttctgaatcgacag 97
|||| |||||||||||||||||||||||
Sbjct: 3 ttttggctgctgatttctgaatcgacag 30
>52613_ptc-miRf10791-akr:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 62 cgatgcagttttagctgctgatttctgaatcg 93
|||||||||||| |||||||||||||| ||||
Sbjct: 79 cgatgcagttttcgctgctgatttctggatcg 48
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 65 tgcagttttagctgctgatttctgaatcg 93
||||||||| |||||||||||||| ||||
Sbjct: 112 tgcagttttcgctgctgatttctgcatcg 84
>52055_ptc-miRf10233-akr:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 62 cgatgcagttttagctgctgatttctgaatcg 93
|||||||||||| |||||||||||||| ||||
Sbjct: 79 cgatgcagttttcgctgctgatttctggatcg 48
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 65 tgcagttttagctgctgatttctgaatcg 93
||||||||| |||||||||||||| ||||
Sbjct: 112 tgcagttttcgctgctgatttctgcatcg 84
>52021_ptc-miRf10199-akr:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 ttttagctgctgatttctgaatcgaca 96
|||| ||||||||||||||||||||||
Sbjct: 20 ttttggctgctgatttctgaatcgaca 46
>53594_ptc-miRf11772-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 cgatgcagttttagctgctgatttct 87
|||||||||||| |||||||||||||
Sbjct: 53 cgatgcagttttcgctgctgatttct 78
>52146_ptc-miRf10324-akr:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 60 aacgatgcagttttagctgctgatttctgaatcg 93
|||||||||||||| ||||| |||||||| ||||
Sbjct: 24 aacgatgcagtttttgctgccgatttctgcatcg 57
>53081_ptc-miRf11259-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 77 tgctgatttctgaatcgacag 97
|||||||||||||||||||||
Sbjct: 35 tgctgatttctgaatcgacag 15
>53080_ptc-miRf11258-akr:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 77 tgctgatttctgaatcgacag 97
|||||||||||||||||||||
Sbjct: 39 tgctgatttctgaatcgacag 19
>52025_ptc-miRf10203-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 77 tgctgatttctgaatcgacag 97
|||||||||||||||||||||
Sbjct: 35 tgctgatttctgaatcgacag 15
>52024_ptc-miRf10202-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 77 tgctgatttctgaatcgacag 97
|||||||||||||||||||||
Sbjct: 35 tgctgatttctgaatcgacag 15
>53958_ptc-miRf12136-akr:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 62 cgatgcagttttagctgctgatttctgaatcg 93
|||||||||||| ||||| |||||||| ||||
Sbjct: 6 cgatgcagttttcgctgccgatttctgcatcg 37
>53936_ptc-miRf12114-akr:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ttttagctgctgatttctgaatcg 93
|||| |||||||||||||||||||
Sbjct: 5 ttttggctgctgatttctgaatcg 28
>53824_ptc-miRf12002-akr:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ttttagctgctgatttctgaatcg 93
|||| |||||||||||||||||||
Sbjct: 41 tttttgctgctgatttctgaatcg 64
>53816_ptc-miRf11994-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 73 tagctgctgatttctgaatcgacagtga 100
||||||| ||||||||||||| ||||||
Sbjct: 38 tagctgccgatttctgaatcggcagtga 65
>53815_ptc-miRf11993-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 73 tagctgctgatttctgaatcgacagtga 100
||||||| ||||||||||||| ||||||
Sbjct: 38 tagctgccgatttctgaatcggcagtga 65
>53457_ptc-miRf11635-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 66 gcagttttagctgctgatttctgaatcg 93
|||||||| ||||| |||||||||||||
Sbjct: 37 gcagttttcgctgccgatttctgaatcg 64
>52968_ptc-miRf11146-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 70 ttttagctgctgatttctgaatcgacag 97
|||| |||| ||||||||||||||||||
Sbjct: 75 ttttggctgttgatttctgaatcgacag 102
>52362_ptc-miRf10540-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ttttagctgctgatttctgaatcg 93
|||| |||||||||||||||||||
Sbjct: 67 tttttgctgctgatttctgaatcg 90
>52291_ptc-miRf10469-akr:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 3e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 62 cgatgcagttttagctgctgatttctgaatcgacag 97
|||||||||||| ||||| ||||||||||||||||
Sbjct: 30 cgatgcagtttt-gctgccaatttctgaatcgacag 64
>52004_ptc-miRf10182-akr:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 62 cgatgcagttttagctgctgatttctgaatcg 93
|||||||||||| ||||| |||||||| ||||
Sbjct: 26 cgatgcagttttcgctgccgatttctgcatcg 57
