miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52026_ptc-miRf10204-akr:pmrd
Length = 105
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgccaaattatagtgtccgcagcgaatca-gttttcgctg 62
|||||||||||||||||||||||| |||| | | |||||||||||||| | ||||||||
Sbjct: 102 gcagcgaatcaggtgttcactgccgaattgtgttatccgcagcgaatcagggtttcgctg 43
Query: 63 ccgaattgtggtgtctgcagcaaatc 88
|||||||||| |||| ||||| ||||
Sbjct: 42 ccgaattgtgttgtccgcagcgaatc 17
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgccaaattatagtgtccgcagcgaatcag 53
||||||||||||| ||| ||||| |||| | |||||||||||||||||
Sbjct: 64 gcagcgaatcagggtttcgctgccgaattgtgttgtccgcagcgaatcag 15
>53989_ptc-miRf12167-akr:pmrd
Length = 95
Score = 69.9 bits (35), Expect = 3e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 42 gcagcgaatcagttttcgctgccgaattgtggtgtctgcagcaaatc 88
|||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1 gcagtgaatcagttttcgctgccgaattgtggtgtctgtagcgaatc 47
Score = 50.1 bits (25), Expect = 3e-07
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 23 ctgccaaattatagtgtccgcagcgaatcagttttcgctgccgaattgtggtgtctgcag 82
||||| |||| | ||||| | ||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 19 ctgccgaattgtggtgtctgtagcgaatcaattttcactgc-gaattgtggtgtctgcag 77
Query: 83 c 83
|
Sbjct: 78 c 78
>53756_ptc-miRf11934-akr:pmrd
Length = 109
Score = 61.9 bits (31), Expect = 8e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 36 gtgtccgcagcgaatcagttttcgctgccgaattgtggtgtctgcagcaaatccgttttc 95
||||| ||||||||||||||| |||||||||| |||| |||| | ||||||| |||||||
Sbjct: 3 gtgtcagcagcgaatcagttt-cgctgccgaagtgtgttgtccgtagcaaatgcgttttc 61
Query: 96 gct 98
|||
Sbjct: 62 gct 64
>53722_ptc-miRf11900-akr:pmrd
Length = 115
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 36 gtgtccgcagcgaatcagttttcgctgccgaattgtggtgtc 77
||||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 5 gtgtcagcagcgaatcagtttttgctgctgaattgtggtgtc 46
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 52 agttttcgctgccgaattgtggtgtctgcagcaaatccgttttcgctgt 100
||||||| || | ||||||||||||| |||||||| | |||||||||||
Sbjct: 58 agttttcactactgaattgtggtgtcagcagcaaaccagttttcgctgt 106
>54063_ptc-miRf12241-akr:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 42 gcagcgaatcagttttcgctgccgaattgtg 72
||||||||| |||||||||||||||||||||
Sbjct: 64 gcagcgaatgagttttcgctgccgaattgtg 34
>53007_ptc-miRf11185-akr:pmrd
Length = 63
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 42 gcagcgaatcagttttcgctgccgaattgtg 72
|||||||||||||||||||||| ||||||||
Sbjct: 3 gcagcgaatcagttttcgctgctgaattgtg 33
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 37 tgtccgcagcgaatcagttttcgctgccgaattgtg 72
|||||||||||||| || |||||||||||||||||
Sbjct: 4 tgtccgcagcgaattagcattcgctgccgaattgtg 39
>53970_ptc-miRf12148-akr:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 37 tgtccgcagcgaatcagttttcgctgccgaat 68
|||| |||||||| ||||||||||||||||||
Sbjct: 78 tgtctgcagcgaaccagttttcgctgccgaat 109
>53387_ptc-miRf11565-akr:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 37 tgtccgcagcgaatcagttttcgctgccgaat 68
|||| |||||||| ||||||||||||||||||
Sbjct: 78 tgtctgcagcgaaccagttttcgctgccgaat 109
>53076_ptc-miRf11254-akr:pmrd
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgcc 27
||||||||||||||||||||||||
Sbjct: 26 gcagcgaatcaggtgttcactgcc 3
>53075_ptc-miRf11253-akr:pmrd
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgcc 27
||||||||||||||||||||||||
Sbjct: 26 gcagcgaatcaggtgttcactgcc 3
>53938_ptc-miRf12116-akr:pmrd
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 5 cagcgaatcaggtgttcactgccaaattatagtgtccgcagcgaatcagtt 55
||||||||||||||||| ||| | |||| | ||||| |||||||||||||
Sbjct: 65 cagcgaatcaggtgttcgctgtcgaattttgatgtccacagcgaatcagtt 15
>53610_ptc-miRf11788-akr:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 37 tgtccgcagcgaatcagttttcgctgccgaa 67
|||| |||||||||||| |||||||||||||
Sbjct: 44 tgtctgcagcgaatcagctttcgctgccgaa 74
>53083_ptc-miRf11261-akr:pmrd
Length = 68
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgc 26
|||||||||||||||||||||||
Sbjct: 26 gcagcgaatcaggtgttcactgc 4
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgc 26
|||||||||||||||||||||||
Sbjct: 65 gcagcgaatcaggtgttcactgc 43
>53082_ptc-miRf11260-akr:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgc 26
|||||||||||||||||||||||
Sbjct: 47 gcagcgaatcaggtgttcactgc 25
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgc 26
|||||||||||||||||||||||
Sbjct: 86 gcagcgaatcaggtgttcactgc 64
>53058_ptc-miRf11236-akr:pmrd
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 39 tccgcagcgaatcagtt-ttcgctgccgaattgtg 72
||||||||||||||| | |||||||||||||||||
Sbjct: 69 tccgcagcgaatcaggtgttcgctgccgaattgtg 35
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 gcagcgaatcaggtgttcactgccaaatt 32
|||||||||||||||||| ||||| ||||
Sbjct: 66 gcagcgaatcaggtgttcgctgccgaatt 38
>52815_ptc-miRf10993-akr:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 37 tgtccgcagcgaatcagttttcgctgccgaa 67
|||| |||||||||||| |||||||||||||
Sbjct: 44 tgtctgcagcgaatcagctttcgctgccgaa 74
>53323_ptc-miRf11501-akr:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 gcagcgaatcagttttcgctgccga 66
|||||||| ||||||||||||||||
Sbjct: 4 gcagcgaagcagttttcgctgccga 28
>52311_ptc-miRf10489-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 37 tgtccgcagcgaatc-agttttcgctgccgaat 68
||||||||||||||| ||| |||||||||||||
Sbjct: 33 tgtccgcagcgaatcaagtgttcgctgccgaat 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 cagcgaatcaggtgttcactgccaaatt 32
||||||||||||||||| ||||| ||||
Sbjct: 104 cagcgaatcaggtgttcgctgccgaatt 77
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 37 tgtccgcagcgaatcagttttcgctgccgaattgtg 72
|||| ||||||||| || |||||||||||||||||
Sbjct: 8 tgtctgcagcgaattagcattcgctgccgaattgtg 43
>54142_ptc-miRf12320-akr:pmrd
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 37 tgtccgcagcgaatcagttttcgctgccgaattgtg 72
|||||||||||||| || ||||||||| |||||||
Sbjct: 4 tgtccgcagcgaattagcattcgctgccaaattgtg 39
