miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54030_ptc-miRf12208-akr:pmrd
Length = 79
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 111 tgagttgtttgcagcgaattagtattcgctgctgaat 147
|||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgagttgtttgcagcgaattagcattcgctgctgaat 37
>52242_ptc-miRf10420-akr:pmrd
Length = 144
Score = 65.9 bits (33), Expect = 8e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctgctga 145
||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 100 ctgccgaaattgagttgcatgcagcgaattagcattcgctgctga 144
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 120 tgcagcgaattagtattcgctgctgaa 146
||||||||||||| |||||||||||||
Sbjct: 3 tgcagcgaattagaattcgctgctgaa 29
>53008_ptc-miRf11186-akr:pmrd
Length = 166
Score = 63.9 bits (32), Expect = 3e-11
Identities = 90/108 (83%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 31 aattctgtgttctgcaccgaatttgagattcgctgtcaaagttgtattgtctgcagcgaa 90
|||| ||||||||||| |||||||| ||||| ||| |||||||| ||||||||| |||
Sbjct: 108 aattgtgtgttctgcagcgaatttgtgattcactgccaaagttgagttgtctgcaatgaa 49
Query: 91 -ttataattttctgccgaaattgagttgtttgcagcgaattagtattc 137
|| | ||| ||| ||||| |||||||| ||||||||||||| ||||
Sbjct: 48 tttgtgattcactgtcgaaactgagttgtctgcagcgaattagaattc 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 81/99 (81%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 1 gttctgcagcgaatttgggattcgctgtcaaa-ttctgtgttctgcaccgaatttgagat 59
||||||||||||||||| ||||| ||| |||| || || |||||| ||||||| |||
Sbjct: 100 gttctgcagcgaatttgtgattcactgccaaagttgagttgtctgcaatgaatttgtgat 41
Query: 60 tcgctgtcaaagttgtattgtctgcagcgaattataatt 98
|| ||||| || || ||||||||||||||||| ||||
Sbjct: 40 tcactgtcgaaactgagttgtctgcagcgaattagaatt 2
Score = 46.1 bits (23), Expect = 7e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctgctgaat 147
||||||||| | |||||| ||||||||||||| |||||||| ||||
Sbjct: 152 ctgccgaaactaagttgtctgcagcgaattagctttcgctgcggaat 106
>54142_ptc-miRf12320-akr:pmrd
Length = 75
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 20 attcgctgtcaaattctgtgttctgcaccgaatttgagattcgctgtcaaa 70
|||||||| |||||| ||||||||||| |||||||| ||||||||| ||||
Sbjct: 22 attcgctgccaaattgtgtgttctgcagcgaatttgtgattcgctgccaaa 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gttctgcagcgaatttgggattcgctgtcaaa 32
||||||||||||||||| ||||||||| ||||
Sbjct: 41 gttctgcagcgaatttgtgattcgctgccaaa 72
>52175_ptc-miRf10353-akr:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctgc 142
|||| |||||||||||||||||||||||||| |||||||||
Sbjct: 61 ctgctgaaattgagttgtttgcagcgaattaacattcgctgc 102
>52174_ptc-miRf10352-akr:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctgc 142
|||| |||||||||||||||||||||||||| |||||||||
Sbjct: 61 ctgctgaaattgagttgtttgcagcgaattaacattcgctgc 102
>53610_ptc-miRf11788-akr:pmrd
Length = 118
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctg 141
|||||||||||||||||| || |||||||||| ||||||||
Sbjct: 67 ctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 115 ttgtttgcagcgaattagtattcgctgctgaa 146
|||| |||||||||||||| ||||||||||||
Sbjct: 5 ttgtctgcagcgaattagtgttcgctgctgaa 36
>52815_ptc-miRf10993-akr:pmrd
Length = 118
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctg 141
|||||||||||||||||| || |||||||||| ||||||||
Sbjct: 67 ctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 115 ttgtttgcagcgaattagtattcgctgctgaa 146
|||| |||||||||||||| ||||||||||||
Sbjct: 5 ttgtctgcagcgaattagtgttcgctgctgaa 36
>52783_ptc-miRf10961-akr:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 2e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 80 tctgcagcgaa-ttataattttctgccgaaattgagttgtttgcagcgaattagtattcg 138
||||||||||| || | |||| ||||||||| |||||| | ||||| ||||||| |||||
Sbjct: 1 tctgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcg 60
Query: 139 ctgctgaat 147
|||||||||
Sbjct: 61 ctgctgaat 69
>54055_ptc-miRf12233-akr:pmrd
Length = 113
Score = 54.0 bits (27), Expect = 3e-08
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 81 ctgcagcgaattataattttctgccgaaattgagttgtttgcagcgaattagt-attcgc 139
||||||||||||| ||| ||||||||| |||||||| ||||||||||| || ||||||
Sbjct: 45 ctgcagcgaattagcattcgctgccgaaactgagttgtctgcagcgaatttgtgattcgc 104
Query: 140 tgc 142
|||
Sbjct: 105 tgc 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 tctgcagcgaatttgggattcgctg 27
||||||||||||||| |||||||||
Sbjct: 82 tctgcagcgaatttgtgattcgctg 106
>52355_ptc-miRf10533-akr:pmrd
Length = 112
Score = 54.0 bits (27), Expect = 3e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 80 tctgcagcgaattataattttctgccgaaattgagttgtttgcagcgaattagtattcgc 139
|||||||||||||| ||| ||||||||| ||||| | ||||||||||||| ||||||
Sbjct: 44 tctgcagcgaattagcattcgctgccgaaactgagtcttctgcagcgaattagcattcgc 103
Query: 140 tgc 142
|||
Sbjct: 104 tgc 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctgc 142
||||||||| ||||| | ||||||||||||| |||||||||
Sbjct: 27 ctgccgaaactgagtcttctgcagcgaattagcattcgctgc 68
>52207_ptc-miRf10385-akr:pmrd
Length = 112
Score = 52.0 bits (26), Expect = 1e-07
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 81 ctgcagcgaattataattttctgccgaaattgagttgtttgcagcgaattagtattcgct 140
||||||||||||| ||| ||||||||| ||||| | ||||||||||||| |||||||
Sbjct: 45 ctgcagcgaattagcattcgctgccgaaactgagtcttctgcagcgaattagcattcgct 104
Query: 141 gc 142
||
Sbjct: 105 gc 106
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 111 tgagttgtttgcagcgaattagtattcgctgctgaat 147
|||||||| ||||||||||||| ||||||||| ||||
Sbjct: 3 tgagttgtctgcagcgaattagcattcgctgccgaat 39
>54190_ptc-miRf12368-akr:pmrd
Length = 143
Score = 50.1 bits (25), Expect = 5e-07
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 20 attcgctgtcaaattctgtgttctgcaccgaatttgagattcgctgtcaaagttgtattg 79
|||||||| | |||| ||||||||||| |||| ||| ||||||||| | |||||| | |
Sbjct: 108 attcgctgccgaattgtgtgttctgcagcgaagttgtgattcgctgccgaagttgagtgg 49
Query: 80 tctgcagcgaatt 92
| |||||||||||
Sbjct: 48 tttgcagcgaatt 36
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 101 ctgccgaaattgagttgtttgcagcgaatt 130
|||||||| |||||| ||||||||||||||
Sbjct: 65 ctgccgaagttgagtggtttgcagcgaatt 36
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 120 tgcagcgaattagtattcgctgctgaat 147
||||||||||||| ||||||||| ||||
Sbjct: 122 tgcagcgaattagcattcgctgccgaat 95
>52150_ptc-miRf10328-akr:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 3 tctgcagcgaatttgggattcgctgtcaaattctgtgttctgcaccgaa 51
||||||||||||||| ||||||||| | |||| |||||| |||| ||||
Sbjct: 36 tctgcagcgaatttgtgattcgctgccgaattgtgtgttgtgcagcgaa 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 83 gcagcgaattataattttctgccgaaattgagttgtttgcagcgaattagt-attcgctg 141
||||||||||| ||| ||||||||| ||||||| ||||||||||| || ||||||||
Sbjct: 1 gcagcgaattagcattcgctgccgaaacggagttgtctgcagcgaatttgtgattcgctg 60
Query: 142 ctgaat 147
| ||||
Sbjct: 61 ccgaat 66
>53726_ptc-miRf11904-akr:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 aagttgtattgtctgcagcgaatt 92
||||||||||||||||||||||||
Sbjct: 71 aagttgtattgtctgcagcgaatt 94
>53971_ptc-miRf12149-akr:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 120 tgcagcgaattagtattcgctgctgaa 146
|||||||||| ||||||||||||||||
Sbjct: 3 tgcagcgaatcagtattcgctgctgaa 29
>53970_ptc-miRf12148-akr:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 7e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 105 cgaaattgagttgtttgcagcgaattagtattcgctgctgaat 147
|||||||||||||| ||||||||| ||| |||||||| ||||
Sbjct: 67 cgaaattgagttgtctgcagcgaaccagttttcgctgccgaat 109
>53387_ptc-miRf11565-akr:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 7e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 105 cgaaattgagttgtttgcagcgaattagtattcgctgctgaat 147
|||||||||||||| ||||||||| ||| |||||||| ||||
Sbjct: 67 cgaaattgagttgtctgcagcgaaccagttttcgctgccgaat 109
>52564_ptc-miRf10742-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 7e-06
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 101 ctgccgaaattgagttgtttgcagcgaattagt-attcgctgctgaa 146
||||||||| |||||||| ||||||||| | || |||||||||||||
Sbjct: 62 ctgccgaaactgagttgtctgcagcgaaattgtgattcgctgctgaa 108
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 44.1 bits (22), Expect = 3e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 20 attcgctgtcaaattctgtgttctgcaccgaatttgagattcgctg 65
|||||||| | |||| ||||||||||| |||| ||| |||||||||
Sbjct: 22 attcgctgccgaattgtgtgttctgcagcgaaattgtgattcgctg 67
>52969_ptc-miRf11147-akr:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttctgcagcgaatttgggattcgctgtc 29
|||||||||||||| || |||||||||||
Sbjct: 94 gttctgcagcgaatctgtgattcgctgtc 122
>51959_ptc-miRf10137-akr:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gttctgcagcgaatttgggattcgctgtc 29
|||||||||||||| || |||||||||||
Sbjct: 94 gttctgcagcgaatctgtgattcgctgtc 122
>54011_ptc-miRf12189-akr:pmrd
Length = 158
Score = 40.1 bits (20), Expect = 4e-04
Identities = 54/64 (84%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 2 ttctgcagcgaatttgggattcgctgtcaaattctgtgttctgcaccgaatttgagattc 61
|||||||||||| || | |||||||||| |||| |||||| |||| |||| || |||||
Sbjct: 9 ttctgcagcgaa-ttagcattcgctgtcgaattgtgtgttgtgcagcgaaactgtgattc 67
Query: 62 gctg 65
||||
Sbjct: 68 gctg 71
>53359_ptc-miRf11537-akr:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 ctgccgaaattgagttgtttgcag 124
|||||||||||||||||| |||||
Sbjct: 29 ctgccgaaattgagttgtctgcag 52
>53007_ptc-miRf11185-akr:pmrd
Length = 63
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 120 tgcagcgaattagtattcgctgctgaat 147
|||||||||| ||| |||||||||||||
Sbjct: 2 tgcagcgaatcagttttcgctgctgaat 29
