miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattgggactcgacgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattgggactcgacgca 29
Query: 61 agacccaagagaattgggtcctccgca 87
|||||||||||||||||||||||||||
Sbjct: 28 agacccaagagaattgggtcctccgca 2
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattgggactcgacgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattgggactcgacgca 60
Query: 61 agacccaagagaattgggtcctccgca 87
|||||||||||||||||||||||||||
Sbjct: 61 agacccaagagaattgggtcctccgca 87
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattgggactcgacgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattgggactcgacgca 60
Query: 61 agacccaagagaattgggtcctccgca 87
|||||||||||||||||||||||||||
Sbjct: 61 agacccaagagaattgggtcctccgca 87
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 83.8 bits (42), Expect = 2e-17
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagacccaaga 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 tgcaggacccattacccttgggtcctgacgcaagacccaaga 1
Score = 79.8 bits (40), Expect = 3e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 16 ccttgggtcctgacgcaagacccaagagaattgggactcgacgcaagacccaagagaatt 75
|||||||||||||||| |||||||||||||||| | || |||||| |||||| |||||||
Sbjct: 110 ccttgggtcctgacgccagacccaagagaattgagtcttgacgcaggacccatgagaatt 51
Query: 76 gggtcctc 83
|||||||
Sbjct: 50 aggtcctc 43
>52780_ptc-miRf10958-akr:pmrd
Length = 95
Score = 61.9 bits (31), Expect = 7e-11
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaatt 47
|||| ||||||| |||||||||||||||||| ||||| |||||||||
Sbjct: 90 tgcatgacccatcacccttgggtcctgacgctagaccgaagagaatt 44
>52012_ptc-miRf10190-akr:pmrd
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagagaattggg 50
|||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct: 26 tgcaggacccattagccttgggccctgatgggagacccaagagaattggg 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 agacccaagagaattgggtcc 81
|||||||||||||||||||||
Sbjct: 58 agacccaagagaattgggtcc 78
>53676_ptc-miRf11854-akr:pmrd
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagaccca 39
|||||||||||||||| |||||||| |||||||||||||
Sbjct: 48 tgcaggacccattaccattgggtcc-gacgcaagaccca 11
>53675_ptc-miRf11853-akr:pmrd
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagaccca 39
|||||||||||||||| |||||||| |||||||||||||
Sbjct: 48 tgcaggacccattaccattgggtcc-gacgcaagaccca 11
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 4 aggacccattacccttgggtcctgacgcaagacccaaga 42
||||||||||| |||||| |||||||||| |||||||||
Sbjct: 48 aggacccattagccttggatcctgacgcatgacccaaga 10
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 16 ccttgggtcctgacgcaagacccaagagaattgg 49
||||||||||| |||| ||||||||||||||||
Sbjct: 120 ccttgggtcctaacgctggacccaagagaattgg 87
>54156_ptc-miRf12334-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| |||||||||||||||||| ||||||
Sbjct: 44 gacccattgcccttgggtcctgacgcaggaccca 11
>54155_ptc-miRf12333-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| ||||||||||||||||||||||||
Sbjct: 44 gacccattgtccttgggtcctgacgcaagaccca 11
>53959_ptc-miRf12137-akr:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| ||||||||||||||||||||||||
Sbjct: 49 gacccattgtccttgggtcctgacgcaagaccca 82
>53373_ptc-miRf11551-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| |||||||||||||||||| ||||||
Sbjct: 11 gacccattgcccttgggtcctgacgcaggaccca 44
>53372_ptc-miRf11550-akr:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| ||||||||||||||||||||||||
Sbjct: 49 gacccattgtccttgggtcctgacgcaagaccca 82
>53109_ptc-miRf11287-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| ||||||||||||||||||||||||
Sbjct: 44 gacccattgtccttgggtcctgacgcaagaccca 11
>52558_ptc-miRf10736-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| |||||||||||||||||| ||||||
Sbjct: 90 gacccattgcccttgggtcctgacgcaggaccca 57
>52557_ptc-miRf10735-akr:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| ||||||||||||||||||||||||
Sbjct: 82 gacccattgtccttgggtcctgacgcaagaccca 49
>52143_ptc-miRf10321-akr:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 6 gacccattacccttgggtcctgacgcaagaccca 39
|||||||| |||||||||||||||||| ||||||
Sbjct: 7 gacccattgcccttgggtcctgacgcaggaccca 40
>52476_ptc-miRf10654-akr:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 2 gcaggacccattacccttgggtcctgacgcaagacccaagagaattggg 50
||||||| |||||||||| | |||||| | ||||||||||||||||||
Sbjct: 34 gcaggactcattaccctttgatcctgataccagacccaagagaattggg 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 agacccaagagaattgggtc 80
||||||||||||||||||||
Sbjct: 65 agacccaagagaattgggtc 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 2 gcaggacccattacccttgggtcctga 28
||||||||||||| ||||||||||||
Sbjct: 6 gcaggacccattagtcttgggtcctga 32
>54273_ptc-miRf12451-akr:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tgcaggacccattacccttgggtcctga 28
|||||||||||||| |||||||||||||
Sbjct: 89 tgcaggacccattaaccttgggtcctga 62
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 2 gcaggacccattacccttgggtcctgacgcaagacc 37
||||||||||||| |||||||| |||||||| ||||
Sbjct: 36 gcaggacccattagccttgggttctgacgcaggacc 1
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 21 ggtcctgacgcaagacccaagagaattgggactcgacgcaagacccaagagaattgggtc 80
|||||| |||| ||||||||||||||||| | ||| || ||||| ||||||||| ||
Sbjct: 100 ggtcctaacgccggacccaagagaattgggtcctgacacaggacccgtgagaattggttc 41
Query: 81 ctccgca 87
|||||||
Sbjct: 40 ctccgca 34
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 2 gcaggacccattacccttgggtcctgacgcaagacc 37
||||||||||||| |||||||| |||||||| ||||
Sbjct: 36 gcaggacccattagccttgggttctgacgcaggacc 1
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 21 ggtcctgacgcaagacccaagagaattgggactcgacgcaagacccaagagaattgggtc 80
|||||| |||| ||||||||||||||||| | ||| || ||||| ||||||||| ||
Sbjct: 100 ggtcctaacgccggacccaagagaattgggtcctgacacaggacccgtgagaattggttc 41
Query: 81 ctccgca 87
|||||||
Sbjct: 40 ctccgca 34
>54348_ptc-miRf12526-akr:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 6 gacccattacccttgggtcctgacgcaagacccaagagaattgggactcgacgcaagacc 65
||||||||| | ||||| ||| || | ||||| |||||||||||| | ||| || | ||
Sbjct: 82 gacccattagcgttgggacctaacaccagacctaagagaattgggtcctgacacaggtcc 23
Query: 66 caagagaattgggtc 80
|||||||||||||||
Sbjct: 22 caagagaattgggtc 8
>54238_ptc-miRf12416-akr:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ttgggtcctgacgcaagacccaagaga 44
|||||||||||||||||||| ||||||
Sbjct: 24 ttgggtcctgacgcaagacctaagaga 50
>52614_ptc-miRf10792-akr:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ttgggtcctgacgcaagacccaagaga 44
|||||||||||||||||||| ||||||
Sbjct: 24 ttgggtcctgacgcaagacctaagaga 50
>53244_ptc-miRf11422-akr:pmrd
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 18 ttgggtcctgacgcaagacccaagag 43
|||||||| |||||||||||||||||
Sbjct: 117 ttgggtccagacgcaagacccaagag 92
>52123_ptc-miRf10301-akr:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 34 gacccaagagaattgggactcgacgcaagacccaagagaattgggtcctccgca 87
||||||||||||||||| | ||| || ||||| ||||||||| |||||||||
Sbjct: 80 gacccaagagaattgggtcctgacacaggacccgtgagaattggttcctccgca 27
>51960_ptc-miRf10138-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 61 agacccaagagaattgggtcct 82
||||||||||||||||||||||
Sbjct: 91 agacccaagagaattgggtcct 70
>52359_ptc-miRf10537-akr:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 6e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 2 gcaggacccattacccttgggtcctgacgcaagacccaagagaattggg 50
|||||||||||||||||| |||||| ||| |||| || |||||||||
Sbjct: 29 gcaggacccattacccttaagtcctgccgcgggacctaaaagaattggg 77
>52337_ptc-miRf10515-akr:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 16 ccttgggtcctgacgcaagacccaagagaattgggactcgacgcaagacccaagagaatt 75
||||||||| ||||||| ||| |||||||||||| || | ||| |||||||| ||| |
Sbjct: 14 ccttgggtcatgacgcagtacctaagagaattgggtctgaaggcaggacccaagcgaaat 73
Query: 76 gggtc 80
|||||
Sbjct: 74 gggtc 78
>52276_ptc-miRf10454-akr:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 62 gacccaagagaattgggtcct 82
|||||||||||||||||||||
Sbjct: 83 gacccaagagaattgggtcct 63
>52075_ptc-miRf10253-akr:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 3 caggacccattacccttgggtcctgacgcaagaccca 39
|||||||||||| | ||||||||| ||||| ||||||
Sbjct: 86 caggacccattagcattgggtcctaacgcaggaccca 122
>54192_ptc-miRf12370-akr:pmrd
Length = 156
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 17 cttgggtcctgacgcaagacccaa 40
|||||||||||||||| |||||||
Sbjct: 108 cttgggtcctgacgcaggacccaa 131
>52942_ptc-miRf11120-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 59 caagacccaagagaattgggtcct 82
|||||||||||| |||||||||||
Sbjct: 8 caagacccaagaaaattgggtcct 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 20 gggtcctgacgcaagacccaagagaattggga 51
|||| |||||||| || |||||||||||||||
Sbjct: 53 gggttctgacgcaggatccaagagaattggga 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 24 cctgacgcaagacccaagagaattggg 50
|||||| |||||||||||| |||||||
Sbjct: 1 cctgacacaagacccaagaaaattggg 27
>52208_ptc-miRf10386-akr:pmrd
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 22 gtcctgacgcaagacccaagagaattgg 49
||||||||||| |||||||||| |||||
Sbjct: 73 gtcctgacgcaggacccaagagcattgg 46
>54314_ptc-miRf12492-akr:pmrd
Length = 113
Score = 38.2 bits (19), Expect = 0.001
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 1 tgcaggacccattacccttgggtcctgacgcaagacccaagag 43
|||||||||||| | ||||||||| || || |||||||||||
Sbjct: 57 tgcaggacccatcaaccttgggtcttgccgacagacccaagag 15
>53674_ptc-miRf11852-akr:pmrd
Length = 111
Score = 38.2 bits (19), Expect = 0.001
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 4 aggacccattacccttgggtcctgacgcaagacccaagagaattggg 50
||||||||||| ||||||||| |||| ||||||||||| |||||
Sbjct: 53 aggacccattagacttgggtccccacgcctgacccaagagatttggg 7
>52456_ptc-miRf10634-akr:pmrd
Length = 115
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62 gacccaagagaattgggtc 80
|||||||||||||||||||
Sbjct: 6 gacccaagagaattgggtc 24
>52221_ptc-miRf10399-akr:pmrd
Length = 140
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 58 gcaagacccaagagaattgggtc 80
|||||||||||||||| ||||||
Sbjct: 40 gcaagacccaagagaactgggtc 18
