miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52783_ptc-miRf10961-akr:pmrd
Length = 103
Score = 77.8 bits (39), Expect = 2e-15
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
|||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 5 cagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgctgc 64
Query: 142 tga 144
|||
Sbjct: 65 tga 67
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 acagcgaaattgtgattcgctgccga 106
|||||||| |||||||||||||||||
Sbjct: 78 acagcgaatttgtgattcgctgccga 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctgctgaa 29
||||||| ||||||| |||||||||||||
Sbjct: 40 tctgcagtgaattagcattcgctgctgaa 68
>52564_ptc-miRf10742-akr:pmrd
Length = 112
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaa 127
||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 44 cagcgaaattgtgattcgctgccgaaactgagttgtctgcagcgaa 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 61 ctgccgaaagtgtattgactacagcgaaattgtgattcgctgc 103
||||||||| || ||| || ||||||||||||||||||||||
Sbjct: 62 ctgccgaaactgagttgtctgcagcgaaattgtgattcgctgc 104
>53610_ptc-miRf11788-akr:pmrd
Length = 118
Score = 65.9 bits (33), Expect = 8e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 96 ttcgctgccgaaattgagttgcatgcagcgaattagcattcgctg 140
||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctgctgaagtt 32
||||||||||||||| |||||||||||||||
Sbjct: 8 tctgcagcgaattagtgttcgctgctgaagtt 39
>52815_ptc-miRf10993-akr:pmrd
Length = 118
Score = 65.9 bits (33), Expect = 8e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 96 ttcgctgccgaaattgagttgcatgcagcgaattagcattcgctg 140
||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctgctgaagtt 32
||||||||||||||| |||||||||||||||
Sbjct: 8 tctgcagcgaattagtgttcgctgctgaagtt 39
>52237_ptc-miRf10415-akr:pmrd
Length = 147
Score = 65.9 bits (33), Expect = 8e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 100 ctgccgaaattgagttgcatgcagcgaattagcattcgctgctga 144
||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctgctga 145
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tgcagcgaattagaattcgctgctgaa 29
||||||||||||| |||||||||||||
Sbjct: 120 tgcagcgaattagtattcgctgctgaa 146
>54011_ptc-miRf12189-akr:pmrd
Length = 158
Score = 63.9 bits (32), Expect = 3e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
|||||||| |||||||||||||||||| || || | |||||| ||||||||||||||||
Sbjct: 51 cagcgaaactgtgattcgctgccgaaactgcgtcggctgcagcaaattagcattcgctgc 110
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagt 114
||||||| ||||||||||||||||||| |||||
Sbjct: 126 cagcgaatttgtgattcgctgccgaaactgagt 158
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 119 tgcagcgaattagcattcgctg 140
||||||||||||||||||||||
Sbjct: 12 tgcagcgaattagcattcgctg 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctg 24
||||||||||||||| ||||||||
Sbjct: 10 tctgcagcgaattagcattcgctg 33
>53008_ptc-miRf11186-akr:pmrd
Length = 166
Score = 63.9 bits (32), Expect = 3e-11
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 90 ttgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
||||||||||||||||||| | ||||| |||||||||||||| ||||||||
Sbjct: 162 ttgtgattcgctgccgaaactaagttgtctgcagcgaattagctttcgctgc 111
Score = 46.1 bits (23), Expect = 7e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 90 ttgtgattcgctgccgaaattgagttgcatgcagcgaattagcattc 136
||||||||| ||| ||||| ||||||| ||||||||||||| ||||
Sbjct: 47 ttgtgattcactgtcgaaactgagttgtctgcagcgaattagaattc 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 tctgcagcgaattagaattc 20
||||||||||||||||||||
Sbjct: 20 tctgcagcgaattagaattc 1
>53359_ptc-miRf11537-akr:pmrd
Length = 114
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 86 gaaattgtgattcgctgccgaaattgagttg 116
|||||||||||||||||||||||||||||||
Sbjct: 15 gaaattgtgattcgctgccgaaattgagttg 45
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagt 114
||||||||||||||||||||||||||| |||||
Sbjct: 51 cagcgaaattgtgattcgctgccgaaactgagt 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 110 tgagttgcatgcagcgaattagcattcgctgc 141
||||||| |||||||||||||||||||||||
Sbjct: 3 tgagttgtctgcagcgaattagcattcgctgc 34
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctgc 25
||||||||||||||| |||||||||
Sbjct: 10 tctgcagcgaattagcattcgctgc 34
>54190_ptc-miRf12368-akr:pmrd
Length = 143
Score = 58.0 bits (29), Expect = 2e-09
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagc-attcgctg 140
||||||| |||||||||||||||||| |||||| | ||||||||||| || ||||||||
Sbjct: 83 cagcgaagttgtgattcgctgccgaagttgagtggtttgcagcgaatttgcgattcgctg 24
Query: 141 c 141
|
Sbjct: 23 c 23
Score = 50.1 bits (25), Expect = 5e-07
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 97 tcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
|||||||| ||| |||||| | |||||||||||||||||||||||
Sbjct: 143 tcgctgccaaaactgagttcc-tgcagcgaattagcattcgctgc 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagtt 115
||||||| ||| ||||||||||||||| ||||||
Sbjct: 44 cagcgaatttgcgattcgctgccgaaactgagtt 11
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2 ctgcagcgaattagaattcgctgc 25
|||||||||||||| |||||||||
Sbjct: 123 ctgcagcgaattagcattcgctgc 100
>54055_ptc-miRf12233-akr:pmrd
Length = 113
Score = 56.0 bits (28), Expect = 7e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
|||||||| | |||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 9 cagcgaaactctgattcgctgccgaaactgtgtcagctgcagcgaattagcattcgctgc 68
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 61 ctgccgaaagtgtattgactacagcgaaattgtgattcgctgccgaaa 108
||||||||| || ||| || ||||||| |||||||||||||||||||
Sbjct: 65 ctgccgaaactgagttgtctgcagcgaatttgtgattcgctgccgaaa 112
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 95 attcgctgccgaaattgagttgcatgcagcgaatt 129
|||||||||||||| ||||||| |||||||||||
Sbjct: 60 attcgctgccgaaactgagttgtctgcagcgaatt 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 2 ctgcagcgaattagaattcgctgc 25
|||||||||||||| |||||||||
Sbjct: 45 ctgcagcgaattagcattcgctgc 68
>53970_ptc-miRf12148-akr:pmrd
Length = 109
Score = 56.0 bits (28), Expect = 7e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcg 137
||||||||||||||||||||||||||| || || | ||||| |||||| ||||||
Sbjct: 7 cagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
>53387_ptc-miRf11565-akr:pmrd
Length = 109
Score = 56.0 bits (28), Expect = 7e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcg 137
||||||||||||||||||||||||||| || || | ||||| |||||| ||||||
Sbjct: 7 cagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
>52355_ptc-miRf10533-akr:pmrd
Length = 112
Score = 56.0 bits (28), Expect = 7e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
|||||||| | |||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 9 cagcgaaactctgattcactgccgaaactgagtcttctgcagcgaattagcattcgctgc 68
Score = 54.0 bits (27), Expect = 3e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 95 attcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
|||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 60 attcgctgccgaaactgagtcttctgcagcgaattagcattcgctgc 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctgc 25
||||||||||||||| |||||||||
Sbjct: 44 tctgcagcgaattagcattcgctgc 68
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctgc 25
||||||||||||||| |||||||||
Sbjct: 82 tctgcagcgaattagcattcgctgc 106
>54030_ptc-miRf12208-akr:pmrd
Length = 79
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 110 tgagttgcatgcagcgaattagcattcgctgctga 144
||||||| ||||||||||||||||||||||||||
Sbjct: 1 tgagttgtttgcagcgaattagcattcgctgctga 35
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tgcagcgaattagaattcgctgctgaa 29
||||||||||||| |||||||||||||
Sbjct: 10 tgcagcgaattagcattcgctgctgaa 36
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaa 108
|||||||||||||||||||||||||||
Sbjct: 47 cagcgaaattgtgattcgctgccgaaa 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 gcagcgaattagcattcgctgc 141
||||||||||||||||||||||
Sbjct: 9 gcagcgaattagcattcgctgc 30
>52207_ptc-miRf10385-akr:pmrd
Length = 112
Score = 54.0 bits (27), Expect = 3e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 95 attcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
|||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 60 attcgctgccgaaactgagtcttctgcagcgaattagcattcgctgc 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
|||||||| | |||||| ||||||||| || || |||||||||||||||||||||||
Sbjct: 9 cagcgaaactctgattcactgccgaaactgtgtcagctgcagcgaattagcattcgctgc 68
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctgc 25
||||||||||||||| |||||||||
Sbjct: 82 tctgcagcgaattagcattcgctgc 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 2 ctgcagcgaattagaattcgctgc 25
|||||||||||||| |||||||||
Sbjct: 45 ctgcagcgaattagcattcgctgc 68
>52175_ptc-miRf10353-akr:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 99 gctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
||||| |||||||||||| |||||||||||| ||||||||||
Sbjct: 60 gctgctgaaattgagttgtttgcagcgaattaacattcgctgc 102
>52174_ptc-miRf10352-akr:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 99 gctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
||||| |||||||||||| |||||||||||| ||||||||||
Sbjct: 60 gctgctgaaattgagttgtttgcagcgaattaacattcgctgc 102
>52615_ptc-miRf10793-akr:pmrd
Length = 76
Score = 52.0 bits (26), Expect = 1e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 88 aattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
||||||||||||||||||||| |||||| ||| |||||| ||| ||||||||
Sbjct: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgc 68
>54142_ptc-miRf12320-akr:pmrd
Length = 75
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 gcagcgaattagcattcgctgc 141
||||||||||||||||||||||
Sbjct: 9 gcagcgaattagcattcgctgc 30
>52150_ptc-miRf10328-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 gcagcgaattagcattcgctgc 141
||||||||||||||||||||||
Sbjct: 1 gcagcgaattagcattcgctgc 22
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 82 cagcgaaattgtgattcgctgccgaa 107
||||||| ||||||||||||||||||
Sbjct: 40 cagcgaatttgtgattcgctgccgaa 65
>53971_ptc-miRf12149-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tctgcagcgaattagaattcgctgctgaa 29
|||||||||||| || |||||||||||||
Sbjct: 1 tctgcagcgaatcagtattcgctgctgaa 29
