miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 159 bits (80), Expect = 5e-40
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnnt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaat 60
Query: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 159 bits (80), Expect = 5e-40
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnnt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaat 62
Query: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 103
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 159 bits (80), Expect = 5e-40
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnnt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaat 62
Query: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 103
>51618_ptc-miR162c:pmrd
Length = 107
Score = 159 bits (80), Expect = 5e-40
Identities = 94/101 (93%)
Strand = Plus / Minus
Query: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnnt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 104 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaat 45
Query: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 4
>51617_ptc-miR162b:pmrd
Length = 107
Score = 159 bits (80), Expect = 5e-40
Identities = 94/101 (93%)
Strand = Plus / Minus
Query: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnnt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 104 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaat 45
Query: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 4
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 87.7 bits (44), Expect = 1e-18
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnnt 60
||||| |||||||||||||||||||||||||||| |||| |||||| |||| |
Sbjct: 2 gaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaatt 61
Query: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||| |||||||||||||||||||||||||||||||
Sbjct: 62 ggccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 87.7 bits (44), Expect = 1e-18
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnnt 60
||||| |||||||||||||||||||||||||||| |||| |||||| |||| |
Sbjct: 2 gaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaatt 61
Query: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||| |||||||||||||||||||||||||||||||
Sbjct: 62 ggccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
>51616_ptc-miR162a:pmrd
Length = 107
Score = 87.7 bits (44), Expect = 1e-18
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacnnnnnnnt 60
||||| |||||||||||||||||||||||||||| |||| |||||| |||| |
Sbjct: 104 gaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaatt 45
Query: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||| |||||||||||||||||||||||||||||||
Sbjct: 44 ggccaggaagagatcgatgaaccgctgcctccagtgtcttc 4
>48493_ghr-miR162a:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 63 tcaggaaaagatcgatgaaccgctgcctccagtgtctt 100
||||||| ||||||||||||||||||||||||||||||
Sbjct: 55 tcaggaagagatcgatgaaccgctgcctccagtgtctt 18
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 114 ctggatgcagaggtttatcgatcg 91
>54387_rco-miR162:pmrd
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 64 caggaaaagatcgatgaaccgctgcctccagtg 96
|||||| ||||||||||||||||||||||||||
Sbjct: 33 caggaagagatcgatgaaccgctgcctccagtg 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 95 ctggatgcagaggtttatcgatcg 72
>48423_cpa-miR162a:pmrd
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 64 caggaaaagatcgatgaaccgctgcctccagtg 96
|||||| ||||||||||||||||||||||||||
Sbjct: 43 caggaagagatcgatgaaccgctgcctccagtg 11
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcggttcgtgtt 39
|||||||||||||||||||||||| ||| ||||
Sbjct: 100 ctggatgcagaggtttatcgatcgattcatgtt 68
>54784_vvi-miR162:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 62 ttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 41 ttcaggaagagatcgatgaaccgctgcatccagtgacttc 2
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcga 27
|||||||||||||||||||||
Sbjct: 93 ctggatgcagaggtttatcga 73
>48545_gma-miR162a:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 62 ttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
|||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 42 ttcaggaagagatcgatgaaccgctgcatccagtgacttc 3
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 93 ctggatgcagaggtttatcgatcg 70
>46937_ath-miR162a:pmrd
Length = 140
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 64 caggaaaagatcgatgaaccgctgcctccag 94
|||||| ||||||||||||||||||||||||
Sbjct: 55 caggaagagatcgatgaaccgctgcctccag 25
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatc 29
|||||||||||||||||||||||
Sbjct: 109 ctggatgcagaggtttatcgatc 87
>48834_osa-miR162a:pmrd
Length = 171
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 actggatgcagaggtttatcgatcg 30
|||||||||||||||||||||||||
Sbjct: 164 actggatgcagaggtttatcgatcg 140
>48707_mtr-miR162d:pmrd
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 62 ttcaggaaaagatcgatgaaccgctgcctccag 94
|||||||| |||||||||||||||||| |||||
Sbjct: 33 ttcaggaacagatcgatgaaccgctgcatccag 1
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcga 27
|||||||||||||||||||||
Sbjct: 87 ctggatgcagaggtttatcga 67
>48706_mtr-miR162c:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 62 ttcaggaaaagatcgatgaaccgctgcctccag 94
|||||||| |||||||||||||||||| |||||
Sbjct: 54 ttcaggaacagatcgatgaaccgctgcatccag 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tggatgcagaggtttatcga 27
||||||||||||||||||||
Sbjct: 1 tggatgcagaggtttatcga 20
>48705_mtr-miR162b:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 62 ttcaggaaaagatcgatgaaccgctgcctcca 93
|||||||| |||||||||||||||||| ||||
Sbjct: 32 ttcaggaacagatcgatgaaccgctgcatcca 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8 tggatgcagaggtttatcga 27
||||||||||||||||||||
Sbjct: 85 tggatgcagaggtttatcga 66
>48682_llu-miR162:pmrd
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 80 ctggatgcagaggtttatcgatcg 57
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 15 ctggatgcagaggtttatcgatcg 38
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 gatcgatgaaccgctgcctccag 94
|||||||||||||||||||||||
Sbjct: 80 gatcgatgaaccgctgcctccag 102
>46938_ath-miR162b:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||||||||||||||
Sbjct: 99 ctggatgcagaggtttatcgatcg 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 72 gatcgatgaaccgctgcctccag 94
|||||||||||||||||||||||
Sbjct: 34 gatcgatgaaccgctgcctccag 12
>54948_zma-miR162b:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcga 27
|||||||||||||||||||||
Sbjct: 130 ctggatgcagaggtttatcga 110
>54542_sly-miR162:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcga 27
|||||||||||||||||||||
Sbjct: 99 ctggatgcagaggtttatcga 79
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcga 27
|||||||||||||||||||||
Sbjct: 21 ctggatgcagaggtttatcga 1
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcga 27
|||||||||||||||||||||
Sbjct: 21 ctggatgcagaggtttatcga 1
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||| ||||||||||
Sbjct: 114 ctggatgcagaggcttatcgatcg 91
>48835_osa-miR162b:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 7 ctggatgcagaggtttatcgatcg 30
||||||||||||| ||||||||||
Sbjct: 124 ctggatgcagaggcttatcgatcg 101
>48690_mdo-miR162:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 71 agatcgatgaaccgctgcctccag 94
|||||||||||||| |||||||||
Sbjct: 24 agatcgatgaaccgatgcctccag 1
