miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52133_ptc-miRf10311-akr:pmrd
Length = 122
Score = 75.8 bits (38), Expect = 6e-15
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 19 ggtcgaccaggtttggtcgggtcgttgccccgaccggtcttttgacaaacccaaaacgat 78
|||||||| ||||| | |||||| |||| | ||||||||||||||||||||||| ||||
Sbjct: 108 ggtcgaccgggttttgccgggtcattgcatcaaccggtcttttgacaaacccaaaccgat 49
Query: 79 ccagctaccgggttgaccgagtcccgggtcgacc 112
| ||| || |||| | ||| ||||||||||||||
Sbjct: 48 ctagccactgggtcggccgggtcccgggtcgacc 15
>52132_ptc-miRf10310-akr:pmrd
Length = 122
Score = 75.8 bits (38), Expect = 6e-15
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 19 ggtcgaccaggtttggtcgggtcgttgccccgaccggtcttttgacaaacccaaaacgat 78
|||||||| ||||| | |||||| |||| | ||||||||||||||||||||||| ||||
Sbjct: 108 ggtcgaccgggttttgccgggtcattgcatcaaccggtcttttgacaaacccaaaccgat 49
Query: 79 ccagctaccgggttgaccgagtcccgggtcgacc 112
| ||| || |||| | ||| ||||||||||||||
Sbjct: 48 ctagccactgggtcggccgggtcccgggtcgacc 15
>52059_ptc-miRf10237-akr:pmrd
Length = 97
Score = 65.9 bits (33), Expect = 6e-12
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 10 cgggtcatgggtcgaccaggtttggtcgggtcgttgccccgaccggtcttttgacaaacc 69
||||||||||||||||| ||||||| || | |||||| ||| | ||||||||||||||||
Sbjct: 97 cgggtcatgggtcgaccgggtttggccgtgccgttgcaccggctggtcttttgacaaacc 38
Query: 70 c 70
|
Sbjct: 37 c 37
>52345_ptc-miRf10523-akr:pmrd
Length = 125
Score = 60.0 bits (30), Expect = 4e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 39 gtcgttgccccgaccggtcttttgacaaacccaaaacgatccagctaccgggtt 92
|||||||| ||| ||||||||||| ||||||| || || |||||||||||||||
Sbjct: 50 gtcgttgcaccggccggtcttttggcaaacccgaatcggtccagctaccgggtt 103
>53371_ptc-miRf11549-akr:pmrd
Length = 93
Score = 58.0 bits (29), Expect = 1e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 23 gaccaggtttggtcgggtcgttgccccgaccggtcttttgacaaacccaaaacgatccag 82
|||| ||||||| || |||||||| |||||| |||||||||||||||| |||| |||||
Sbjct: 19 gaccgggtttggccgagtcgttgcaccgaccagtcttttgacaaacccggaacggtccag 78
Query: 83 c 83
|
Sbjct: 79 c 79
>54232_ptc-miRf12410-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| |||||||||||||||||||||
Sbjct: 19 tccagccaccgggtcgaccgagtcccgggtcgaccc 54
>54004_ptc-miRf12182-akr:pmrd
Length = 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 18 gggtcgaccaggtttggtcgggtcgttgccccgaccggtcttttgacaaacccaaaacga 77
|||||||| |||||| ||||||||||| ||||||||||||||||||||| || ||
Sbjct: 25 gggtcgactgggtttgaccgggtcgttgcattgaccggtcttttgacaaacccgaaccgg 84
Query: 78 tccagctaccgggttgaccgagtcccgggtc 108
|||||| |||||| | ||| ||| ||||||
Sbjct: 85 tccagcccccgggtcggccgggtctcgggtc 115
>54062_ptc-miRf12240-akr:pmrd
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 19 tccagccaccgggtcgaccgggtcccgggtcgaccc 54
>53956_ptc-miRf12134-akr:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 25 tccagccaccgggtcgaccgggtcccgggtcgaccc 60
>53888_ptc-miRf12066-akr:pmrd
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 19 tccagccaccgggtcgaccgggtcccgggtcgaccc 54
>53790_ptc-miRf11968-akr:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 25 tccagccaccgggtcgaccgggtcccgggtcgaccc 60
>53720_ptc-miRf11898-akr:pmrd
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 19 tccagccaccgggtcgaccgggtcccgggtcgaccc 54
>53671_ptc-miRf11849-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 25 tccagccaccgggtcgaccgggtcccgggtcgaccc 60
>53498_ptc-miRf11676-akr:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 28 tccagccaccgggtcgaccgggtcccgggtcgaccc 63
>53068_ptc-miRf11246-akr:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 25 tccagccaccgggtcgaccgggtcccgggtcgaccc 60
>53000_ptc-miRf11178-akr:pmrd
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 19 tccagccaccgggtcgaccgggtcccgggtcgaccc 54
>52823_ptc-miRf11001-akr:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 42 gttgccccgaccggtcttttgacaaacccaaaacgatccagctaccgggttgaccgagtc 101
|||||||| |||||||||| | ||||||| | || |||||| ||||||| || || |||
Sbjct: 56 gttgccccagccggtcttttaataaacccagaccggtccagccaccgggtcgatcgggtc 115
Query: 102 ccgggtcg 109
||||||||
Sbjct: 116 ccgggtcg 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tcgcccgggtcatgggtcgacc 26
||||||||||||||||||||||
Sbjct: 6 tcgcccgggtcatgggtcgacc 27
>52796_ptc-miRf10974-akr:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 29 tccagccaccgggtcgaccgggtcccgggtcgaccc 64
>52317_ptc-miRf10495-akr:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 73 aacgatccagctaccgggttgaccgagtcccgggtcgacc 112
|||| |||||| ||||||||||||| |||||| |||||||
Sbjct: 85 aacggtccagccaccgggttgaccgggtcccgagtcgacc 124
>51849_ptc-miRf10027-akr:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 18 gggtcgaccaggtttggtcgggtcgttgccccgaccggtctttt 61
||||||||| ||||| ||||||||||||| ||| ||| ||||||
Sbjct: 101 gggtcgaccgggttttgtcgggtcgttgcaccggccgatctttt 58
>54338_ptc-miRf12516-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 52 ccggtcttttgacaaacccaaaacgatccagctaccgggttgaccgagtcccgggtcgac 111
|||||||||| |||||||| || || |||||| || || | |||| |||||||||||||
Sbjct: 95 ccggtcttttaacaaacccgaaccggtccagccactaggataaccgggtcccgggtcgac 36
Query: 112 c 112
|
Sbjct: 35 c 35
>53576_ptc-miRf11754-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| || || |||||||||||||||
Sbjct: 25 tccagcgaccgggtcgatcgggtcccgggtcgaccc 60
>53383_ptc-miRf11561-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||||| |||||||||||||||
Sbjct: 28 tccagccaccgggtcgaccg-gtcccgggtcgaccc 62
>53350_ptc-miRf11528-akr:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| ||| | |||||||||||||||
Sbjct: 19 tccagccaccgggtcgactgggtcccgggtcgaccc 54
>53054_ptc-miRf11232-akr:pmrd
Length = 142
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 86 ccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||| |||||||||||||||
Sbjct: 90 ccgggtcgaccgggtcccgggtcgaccc 117
>52916_ptc-miRf11094-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||| || || |||||||||||||||
Sbjct: 28 tccagccaccgggtcgatcgggtcccgggtcgaccc 63
>52383_ptc-miRf10561-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 78 tccagctaccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||||||||||| |||||| |||||||
Sbjct: 63 tccagccaccgggttgaccgggtcccgattcgaccc 28
>52284_ptc-miRf10462-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 tcgcccgggtcatgggtcga 24
||||||||||||||||||||
Sbjct: 6 tcgcccgggtcatgggtcga 25
>51921_ptc-miRf10099-akr:pmrd
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 86 ccgggttgaccgagtcccgggtcgaccc 113
|||||| ||||| |||||||||||||||
Sbjct: 55 ccgggtcgaccgggtcccgggtcgaccc 28
