miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52033_ptc-miRf10211-akr:pmrd
Length = 99
Score = 81.8 bits (41), Expect = 9e-17
Identities = 69/76 (90%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 21 cgtgaattataattcacgtcctactgttca--catgaacagcgagcgtgaattataattc 78
|||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||
Sbjct: 19 cgtgaattataattcacgtcctactgttcatgcatgaacagtg-gcgcgaattataattc 77
Query: 79 acgcccactgctcatg 94
||| |||||| |||||
Sbjct: 78 acgtccactgttcatg 93
Score = 52.0 bits (26), Expect = 8e-08
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 10 tgaacagtagg-cgtgaattataattcacgtcct 42
||||||||||| ||||||||||||||||||||||
Sbjct: 48 tgaacagtaggacgtgaattataattcacgtcct 15
Score = 42.1 bits (21), Expect = 8e-05
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 10 tgaacagtaggcgtgaattataattcacgtcctactgttca 50
|||||||| |||| |||||||||||||||||| ||||||||
Sbjct: 53 tgaacagt-ggcgcgaattataattcacgtcc-actgttca 91
>53002_ptc-miRf11180-akr:pmrd
Length = 78
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 ttcactgcgtgaacagtaggcgtgaattataattcacg 38
|||||||| |||||||| | ||||||||||||||||||
Sbjct: 12 ttcactgcatgaacagtggacgtgaattataattcacg 49
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 63 gcgtgaattataattcacgcccactgctcatgtagtg 99
||||||||||||||||||| |||||| ||||| ||||
Sbjct: 50 gcgtgaattataattcacgtccactgttcatgcagtg 14
Score = 50.1 bits (25), Expect = 3e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 10 tgaacagtaggcgtgaattataattcacgtcctactgttca 50
|||||| | ||||||||||||||||||||||| ||||||||
Sbjct: 60 tgaacaatgggcgtgaattataattcacgtcc-actgttca 21
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 51 catgaacagcgagcgtgaattataattcacgccca 85
||||||||| | ||||||||||||||||||||||
Sbjct: 19 catgaacagtggacgtgaattataattcacgccca 53
>53001_ptc-miRf11179-akr:pmrd
Length = 78
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 ttcactgcgtgaacagtaggcgtgaattataattcacg 38
|||||||| |||||||| | ||||||||||||||||||
Sbjct: 12 ttcactgcatgaacagtggacgtgaattataattcacg 49
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 63 gcgtgaattataattcacgcccactgctcatgtagtg 99
||||||||||||||||||| |||||| ||||| ||||
Sbjct: 50 gcgtgaattataattcacgtccactgttcatgcagtg 14
Score = 50.1 bits (25), Expect = 3e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 10 tgaacagtaggcgtgaattataattcacgtcctactgttca 50
|||||| | ||||||||||||||||||||||| ||||||||
Sbjct: 60 tgaacaatgggcgtgaattataattcacgtcc-actgttca 21
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 51 catgaacagcgagcgtgaattataattcacgccca 85
||||||||| | ||||||||||||||||||||||
Sbjct: 19 catgaacagtggacgtgaattataattcacgccca 53
